Sandbox Test M: Difference between revisions

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Joel L. Sussman (talk | contribs)
New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...
 
Joel L. Sussman (talk | contribs)
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==Your Heading Here (maybe something like 'Structure')==
==AlphaFold2 Model of Sars-CoV-2 Protein M==
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
<StructureSection load='' size='340' side='right' caption='Caption for this structure' scene='90/902730/Sars-cov-2_protein_m/3'>
This is a default text for your page '''Sandbox Test M'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
{{Theoretical_model}} {{Template:ModelConfidence}}
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
To the right is an '''[[AlphaFold]]2''' 3D model of SARS CoV-2 Protein  (UniProt ID: QHD43419) color coded by the pLDDT scores. It corresponds to the highest ranked model in terms of the pLDDT confidence scores, ''i.e.'', model 4<ref name="MIT_ColabFold"> MIT ColabFold https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/beta/AlphaFold2_advanced.ipynb </ref>.
 
== Function ==
== Function ==
'''Protein M'''
Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.<ref>[https://zhanglab.ccmb.med.umich.edu/COVID-19/ Modeling of the SARS-COV-2 Genome]</ref><ref>pmid 32200634</ref>]


== Disease ==
== Disease ==
 
== Relevance ==
== Relevance ==


== Structural highlights ==
== Structural highlights ==
[[Image:SARSCoV2_protein_M_250.gif|250px|left|thumb|'''Morph''' of the top 5 ranked [[AlphaFold]]2 models of '''SARS-CoV-2 Protein M''', ''rainbow'' color coded N-C<ref name="MIT_ColabFold"/>.]]


This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.


== See also ==
[[Coronavirus_Disease 2019 (COVID-19)]]
__NOTOC__
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Latest revision as of 17:45, 3 February 2022

AlphaFold2 Model of Sars-CoV-2 Protein M

Caption for this structure

Drag the structure with the mouse to rotate

References