1j31: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1j31.gif|left|200px]]


<!--
==Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii==
The line below this paragraph, containing "STRUCTURE_1j31", creates the "Structure Box" on the page.
<StructureSection load='1j31' size='340' side='right'caption='[[1j31]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1j31]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J31 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_1j31|  PDB=1j31  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j31 OCA], [https://pdbe.org/1j31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j31 RCSB], [https://www.ebi.ac.uk/pdbsum/1j31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j31 ProSAT]</span></td></tr>
 
</table>
'''Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii'''
== Function ==
 
[https://www.uniprot.org/uniprot/O58376_PYRHO O58376_PYRHO]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1J31 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J31 OCA].  
Check<jmol>
 
  <jmolCheckbox>
==Reference==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j3/1j31_consurf.spt"</scriptWhenChecked>
Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution., Sakai N, Tajika Y, Yao M, Watanabe N, Tanaka I, Proteins. 2004 Dec 1;57(4):869-73. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15390259 15390259]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Pyrococcus horikoshii]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Single protein]]
  </jmolCheckbox>
[[Category: Sakai, N.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j31 ConSurf].
[[Category: Tajika, Y.]]
<div style="clear:both"></div>
[[Category: Tanaka, I.]]
__TOC__
[[Category: Watanabe, N.]]
</StructureSection>
[[Category: Yao, M.]]
[[Category: Large Structures]]
[[Category: Alpha-beta-beta-alpha sandwich]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Structural genomic]]
[[Category: Sakai N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 20:44:43 2008''
[[Category: Tajika Y]]
[[Category: Tanaka I]]
[[Category: Watanabe N]]
[[Category: Yao M]]
Retrieved from "https://proteopedia.org/1j31"