Sandbox Reserved 1783

This Sandbox is Reserved from February 27 through August 31, 2023 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1765 through Sandbox Reserved 1795.

To get started: Click the edit this page tab at the top. Save the page after each step, then edit it again. show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page. Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc. More help: Help:Editing

Sodium Taurocholate Co-Transporting Peptide

spinqualitylabelsall models NTCP shown with bile salts. The bile salts are colored according to elements, with the overall NTCP structure shown in purple. [1] Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Background Figure 1. NTCP structure with both Na+ ions and bile salts bound with the NTCP molecule shown in light blue, the two Na+ ions shown in purple spheres, and the bile salts shown in sticks as dark blue. PDB 7ZYI. Sodium taurocholate co-transporting polypeptide (NTCP) is a sodium-dependent transporter that is responsible for the transportation of bile salts from the blood into epithelial liver cells. NTCP is a secondary active transport molecule that couples the thermodynamically favorable movement of Na+ ions with the unfavorable transport of bile salts into the cell (Fig. 1). The bile salts transported by NTCP in the gastrointestinal tract are involved in digestion, nutrient absorption, fat breakdown, and lipid soluble nutrient transport. NTCP is found within the basolateral membrane hepatocytes. The uptake of bile salts into the liver also allow for drugs and fat soluble vitamins to be both absorbed and excreted in the small intestine. NTCP also acts as a receptor for Hepatitis B virus (HBV) and Hepatitis D virus (HDV) which infect human livers through endocytosis when bound. The myristoylated (myr) preS1 domain of HBV, specifically residues 8-17, is critical for its binding to NTCP which halts the uptake of bile salts, indicating that HBV/HDV bind to NTCP at the same site as bile salts. Figure 2. Bile Salt Structure. Chemical structure of bile salt molecule. Bile salt is derivative of cholesterol, as it is a steroid. Bile salts are also the main components of bile. Structural Overview NTCP has 9 transmembrane alpha helices (TM) that form the protein, with an extracellular N-terminus and intracellular C-terminus. NTCP has two domains within the protein, a panel domain, made up of TM1, TM5, and TM6, and a core domain, made up of TM2-4 and TM7-9. An interesting feature of NTCP is the cross of TM3 and TM8 that form an X motif within the protein that is used in the conformational change of NTCP. The two domains are essential to the conformation change of NTCP to bind bile salts. The intracellular α-helix (ICH) connects TM1 and TM2. The extracellular α-helix connects TM6 and TM7. There are two significant patches in the NTCP structure that facilitate ligand binding. Residues 84-87 of NTCP are Patch 1, which is located on the TM2-TM3 loop in the core domain. This patch is also considered the extracellular region of the binding tunnel within NTCP. Residues 157-165 of NTCP are associated with Patch 2. They are located on the N-terminal half of the TM5 in the panel domain (residue sequence: KGIVISLVL). Patch 2 is also located in the extracellular region of the binding tunnel. These residues' importance was determined through mutations of these residues and examined through pull-down assays. The pre-S1 domain of HBV/HDV binds to the patches on NTCP in order to transport the virus from the exterior of NTCP to the interior binding tunnel to infect human liver cells. Figure 3. Cartoon of NTCP topology. This image depicts a basic overview of NTCP structure. The panel domain is shown in blue, while the core domain is shown in pink and purple. The ICH and ECH connect their respective domains to the other. The N-terminus, as shown, is extracellular, whereas the C-terminus is intracellular. Binding Pocket Each sodium binds to a specific set of residues. Sodium 1 interacts mainly with residues 105, 106, 123, and 257. Sodium 2 interacts mainly with residues 68 and 261. The hydrophilic tunnel allows hydrophilic bile salts and sodium ions to be transported across the hydrophobic cell membrane. In the outward facing state with no bile salt bound to the tunnel, it forms a hollow hole in the middle of the structure. When bile salts bind within, these bile salts completely occlude the tunnel. Conformation Change The conformational change of NTCP's core domain helices is essential to bile salt binding and uptake. Helices 3 and 8 X motif are the main structural components of the conformational change, as the X motif has highly conserved polar residue motifs that reside near the bile salt transport sites. The conformational change is energized by the movement of Na+ down its concentration gradient. Before bile salt can bind, the pore in which salt binds must be open. Conserved glycine and proline residues act as hinges in the connecting short loops, intracellular α-helix, and extracellular α-helix of NTCP to facilitate the movement of the core and panel domain to allow for a conformational change. The open pore is flipped toward the outer membrane to allow for bile salt binding by exposing the Na+ binding sites and the X motif within NTCP. Once bound, the pore is closed, and bile salt is able to be released into the cell, past the inner membrane. Mechanism Figure 4. Bile Salt Uptake Mechanism: Conformational Change. This change in structure aids in the uptake of bile salts. The core domain is shown in pink, and the panel domain is light blue. The dark blue structure is bile salt. When the pore is "open," both the core and panel domains are open to the extracellular side. When the pore is "closed," the domains are open to the intracellular space. The NTCP protein goes through a conformational change when assisting in the uptake of bile salt into the cell. This is accomplished through the opening of a wide transmembrane pore, creating a transport pathway for bile salts. The mechanism includes two sodim metal ions that allow for residue stabilization when going through the conformational change. The binding of the preS1 region of the HBV/HDV virus blocks any subsequent bile salt uptake. Thus, preS1 binding blocks the conformational change and entry of any salts into the cell. Residues 8-17 of preS1 are critical for NTCP:pres1 binding. Patch 1 and Patch 2 (external) residues interact with residues 8-17 of preS1 to facilitate binding. Significance NTCP is a key player in the absorption and digestion of fats and fat-soluble vitamins in the body, as well as the synthesis of bile within the liver. The uptake of bile salts, transcriptional and post-transcriptional, are signaling molecules for the liver and intestine. Bile salt, the transporting molecule of NTCP, aids in the absorption of lipophilic nutrients and vitamins in the small intestine. Additionally, bile salt plays a role in the endocrine system, excretion of toxins, and cholesterol maintenance. Thus, the significance of NTCP lies with the importance of bile salts; NTCP is necessary in maintaining bile salt levels and thus necessary in maintaining the aforementioned biological processes. Bile Salt Uptake Cirrhosis, commonly known as the last stage of liver disease, is due to a deficiency in the bile acid supply in the liver. Bile acid pools, as defined by Vlahcevic, are the negatively-charged precursors to bile and often are conjugated to positively-charged bile salts. This is attributed either a decrease in the production of bile salts or a large increase in the excretion of this molecule out of the cell. Cirrhosis causes symptoms such as jaundice, abdominal pain and swelling, and swelling of the legs and feet. A patient who has type two diabetes, those who are biological men, and those who have done or do abuse alcohol are also more susceptible to developing Cirrhosis. This diagnosis can lead to liver failure and other life-threatening diseases, making bile salt uptake essential to liver function.

Student Contributors

Olivia Simcox, Tatiana Pereda, and Kenna King; Butler University, April 2023