8or1: Difference between revisions
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The | ==Co-crystal strucutre of PD-L1 with low molecular weight inhibitor== | ||
<StructureSection load='8or1' size='340' side='right'caption='[[8or1]], [[Resolution|resolution]] 3.50Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[8or1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8OR1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8OR1 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VYC:5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(~{E})-2-hydroxyethyliminomethyl]phenoxy]methyl]pyridine-3-carbonitrile'>VYC</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8or1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8or1 OCA], [https://pdbe.org/8or1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8or1 RCSB], [https://www.ebi.ac.uk/pdbsum/8or1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8or1 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/PD1L1_HUMAN PD1L1_HUMAN] Involved in the costimulatory signal, essential for T-cell proliferation and production of IL10 and IFNG, in an IL2-dependent and a PDCD1-independent manner. Interaction with PDCD1 inhibits T-cell proliferation and cytokine production.<ref>PMID:10581077</ref> <ref>PMID:11015443</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Novel 2-arylmethoxy-4-(2,2'-dihalogen-substituted biphenyl-3-ylmethoxy) benzylamine derivatives were designed, synthesized, and evaluated in vitro and in vivo against cancers as PD-1/PD-L1 inhibitors. Through the computer-aided structural optimization and the homogeneous time-resolved fluorescence (HTRF) assay, compound A56 was found to most strongly block the PD-1/PD-L1 interaction with an IC(50) value of 2.4 +/- 0.8 nM and showed the most potent activity. (1)H NMR titration results indicated that A56 can tightly bind to the PD-L1 protein with K(D) < 1 muM. The X-ray diffraction data for the cocrystal structure of the A56/PD-L1 complex (3.5 A) deciphered a novel binding mode in detail, which can account for its most potent inhibitory activity. Cell-based assays further demonstrated the strong ability of A56 as an hPD-1/hPD-L1 blocker. Especially in an hPD-L1 MC38 humanized mouse model, A56 significantly inhibited tumor growth without obvious toxicity, with a TGI rate of 55.20% (50 mg/kg, i.g.). In conclusion, A56 is a promising clinical candidate worthy of further development. | |||
Design, Synthesis, and Antitumor Activity Evaluation of 2-Arylmethoxy-4-(2,2'-dihalogen-substituted biphenyl-3-ylmethoxy) Benzylamine Derivatives as Potent PD-1/PD-L1 Inhibitors.,Zhang H, Zhou S, Plewka J, Wu C, Zhu M, Yu Q, Musielak B, Wang X, Awadasseid A, Magiera-Mularz K, Wu Y, Zhang W J Med Chem. 2023 Jul 26. doi: 10.1021/acs.jmedchem.3c00731. PMID:37496104<ref>PMID:37496104</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 8or1" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Awadasseid A]] | |||
[[Category: Magiera-Mularz K]] | |||
[[Category: Plewka J]] | |||
[[Category: Wang X]] | |||
[[Category: Wu C]] | |||
[[Category: Wu Y]] | |||
[[Category: Yu Q]] | |||
[[Category: Zhang H]] | |||
[[Category: Zhang W]] | |||
[[Category: Zhou S]] | |||
[[Category: Zhu M]] | |||
Latest revision as of 10:40, 2 August 2023
Co-crystal strucutre of PD-L1 with low molecular weight inhibitor
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