8jc1: Difference between revisions

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New page: '''Unreleased structure''' The entry 8jc1 is ON HOLD Authors: Jantarit, N., Kurisu, G., Tanaka, H. Description: Crystal structure of Pectocin M1 from Pectobacterium carotovorum [[Categ...
 
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'''Unreleased structure'''


The entry 8jc1 is ON HOLD
==Crystal structure of Pectocin M1 from Pectobacterium carotovorum==
<StructureSection load='8jc1' size='340' side='right'caption='[[8jc1]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8jc1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_carotovorum Pectobacterium carotovorum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8JC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8JC1 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8jc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8jc1 OCA], [https://pdbe.org/8jc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8jc1 RCSB], [https://www.ebi.ac.uk/pdbsum/8jc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8jc1 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/C6DJ69_PECCP C6DJ69_PECCP]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Pectocin M1 (PM1), the bacteriocin from phytopathogenic Pectobacterium carotovorum which causes soft rot disease, has a unique ferredoxin domain that allows it to use FusA of the plant ferredoxin uptake system. To probe the structure-based mechanism of PM1 uptake, we determined the X-ray structure of full-length PM1, containing an N-terminal ferredoxin and C-terminal catalytic domain connected by helical linker, at 2.04 A resolution. Based on published FusA structure and NMR data for PM1 ferredoxin domain titrated with FusA, we modeled docking of the ferredoxin domain with FusA. Combining the docking models with the X-ray structures of PM1 and FusA enables us to propose the mechanism by which PM1 undergoes dynamic domain rearrangement to translocate across the target cell outer membrane.


Authors: Jantarit, N., Kurisu, G., Tanaka, H.
Crystal structure of pectocin M1 reveals diverse conformations and interactions during its initial step via the ferredoxin uptake system.,Jantarit N, Tanaka H, Lin Y, Lee YH, Kurisu G FEBS Open Bio. 2024 Aug 9. doi: 10.1002/2211-5463.13874. PMID:39123319<ref>PMID:39123319</ref>


Description: Crystal structure of Pectocin M1 from Pectobacterium carotovorum
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Tanaka, H]]
<div class="pdbe-citations 8jc1" style="background-color:#fffaf0;"></div>
[[Category: Jantarit, N]]
== References ==
[[Category: Kurisu, G]]
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pectobacterium carotovorum]]
[[Category: Jantarit N]]
[[Category: Kurisu G]]
[[Category: Tanaka H]]
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