1ndn: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1ndn.jpg|left|200px]]


<!--
==MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4==
The line below this paragraph, containing "STRUCTURE_1ndn", creates the "Structure Box" on the page.
<StructureSection load='1ndn' size='340' side='right'caption='[[1ndn]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ndn]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NDN FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ndn OCA], [https://pdbe.org/1ndn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ndn RCSB], [https://www.ebi.ac.uk/pdbsum/1ndn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ndn ProSAT]</span></td></tr>
{{STRUCTURE_1ndn|  PDB=1ndn  |  SCENE= }}
</table>
 
__TOC__
'''MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4'''
</StructureSection>
 
[[Category: Large Structures]]
 
[[Category: Aymani J]]
==Overview==
[[Category: Coll M]]
The molecular structure of a nicked dodecamer DNA double helix, made of a ternary system containing d(CGCGAAAACGCG) + d(CGCGTT) + d(TTCGCG) oligonucleotides, has been determined by x-ray diffraction analysis at 3 A resolution. The molecule adopts a B-DNA conformation, not unlike those found in intact dodecamer DNA molecules crystallized in a somewhat different crystal lattice, despite a gap due to the absence of a phosphate group in the molecule. The helix has a distinct narrow minor groove near the center of the molecule at the AAAA region. This suggests that the internal stabilizing forces due to base stacking and hydrogen-bonding interactions are sufficient to overcome the loss of connectivity associated with the disruption of the covalent backbone of DNA.
[[Category: Rich A]]
 
[[Category: Van Boom JH]]
==About this Structure==
[[Category: Van Der Marel GA]]
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NDN OCA].  
[[Category: Wang AH-J]]
 
==Reference==
Molecular structure of nicked DNA: a substrate for DNA repair enzymes., Aymami J, Coll M, van der Marel GA, van Boom JH, Wang AH, Rich A, Proc Natl Acad Sci U S A. 1990 Apr;87(7):2526-30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/2320572 2320572]
[[Category: Aymani, J.]]
[[Category: Boom, J H.Van.]]
[[Category: Coll, M.]]
[[Category: Marel, G A.Van Der.]]
[[Category: Rich, A.]]
[[Category: Wang, A H.J.]]
[[Category: B-dna]]
[[Category: Double helix]]
[[Category: Nicked]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 02:24:31 2008''

Latest revision as of 07:55, 14 February 2024

MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4

1ndn, resolution 3.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "https://proteopedia.org/index.php?title=1ndn&oldid=4052411"