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New page: left|200px<br /> <applet load="1ri9" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ri9" /> '''Structure of a helically extended SH3 domai...
 
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[[Image:1ri9.gif|left|200px]]<br />
<applet load="1ri9" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1ri9" />
'''Structure of a helically extended SH3 domain of the T cell adapter protein ADAP'''<br />


==Overview==
==Structure of a helically extended SH3 domain of the T cell adapter protein ADAP==
The adapter protein ADAP (FYB/SLAP-130) provides a critical link between T, cell receptor (TCR) signaling and cell adhesion via the activation of, integrins. The C-terminal 70 residues of ADAP show homology to SH3, domains; however, conserved residues of the fold are absent. An alignment, and annotation of this domain has therefore been elusive. We have solved, the three-dimensional structure of the ADAP C-terminal domain by NMR, spectroscopy and show that it represents an altered SH3 domain fold. An, N-terminal, amphipathic helix makes extensive contacts to residues of the, regular SH3 domain fold, and thereby a composite surface with unusual, surface properties is created. We propose this SH3 domain variant to be, classified as a helically extended SH3 domain (hSH3 domain) and show that, the ADAP-hSH3 domain can no longer bind conventional proline-rich, peptides.
<StructureSection load='1ri9' size='340' side='right'caption='[[1ri9]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1ri9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RI9 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ri9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ri9 OCA], [https://pdbe.org/1ri9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ri9 RCSB], [https://www.ebi.ac.uk/pdbsum/1ri9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ri9 ProSAT]</span></td></tr>
</table>
== Disease ==
[https://www.uniprot.org/uniprot/FYB1_HUMAN FYB1_HUMAN] Congenital autosomal recessive small-platelet thrombocytopenia. The disease is caused by variants affecting the gene represented in this entry.
== Function ==
[https://www.uniprot.org/uniprot/FYB1_HUMAN FYB1_HUMAN] Acts as an adapter protein of the FYN and LCP2 signaling cascades in T-cells (By similarity). May play a role in linking T-cell signaling to remodeling of the actin cytoskeleton (PubMed:10747096, PubMed:16980616). Modulates the expression of IL2 (By similarity). Involved in platelet activation (By similarity). Prevents the degradation of SKAP1 and SKAP2 (PubMed:15849195). May be involved in high affinity immunoglobulin epsilon receptor signaling in mast cells (By similarity).[UniProtKB:D3ZIE4][UniProtKB:O35601]<ref>PMID:10747096</ref> <ref>PMID:15849195</ref> <ref>PMID:16980616</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/1ri9_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ri9 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The adapter protein ADAP (FYB/SLAP-130) provides a critical link between T cell receptor (TCR) signaling and cell adhesion via the activation of integrins. The C-terminal 70 residues of ADAP show homology to SH3 domains; however, conserved residues of the fold are absent. An alignment and annotation of this domain has therefore been elusive. We have solved the three-dimensional structure of the ADAP C-terminal domain by NMR spectroscopy and show that it represents an altered SH3 domain fold. An N-terminal, amphipathic helix makes extensive contacts to residues of the regular SH3 domain fold, and thereby a composite surface with unusual surface properties is created. We propose this SH3 domain variant to be classified as a helically extended SH3 domain (hSH3 domain) and show that the ADAP-hSH3 domain can no longer bind conventional proline-rich peptides.


==About this Structure==
Structure of a helically extended SH3 domain of the T cell adapter protein ADAP.,Heuer K, Kofler M, Langdon G, Thiemke K, Freund C Structure. 2004 Apr;12(4):603-10. PMID:15062083<ref>PMID:15062083</ref>
1RI9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1RI9 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Structure of a helically extended SH3 domain of the T cell adapter protein ADAP., Heuer K, Kofler M, Langdon G, Thiemke K, Freund C, Structure. 2004 Apr;12(4):603-10. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15062083 15062083]
</div>
<div class="pdbe-citations 1ri9" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Freund, C.]]
[[Category: Freund C]]
[[Category: Heuer, K.]]
[[Category: Heuer K]]
[[Category: Kofler, M.]]
[[Category: Kofler M]]
[[Category: Langdon, G.]]
[[Category: Langdon G]]
[[Category: Thiemke, K.]]
[[Category: Thiemke K]]
[[Category: helically extended]]
[[Category: sh3-like]]
 
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Latest revision as of 09:03, 9 May 2024

Structure of a helically extended SH3 domain of the T cell adapter protein ADAP

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