Entertaining PDB codes: Difference between revisions
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Here are some entertaining (amusing, humorous) PDB codes<ref>Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.</ref>. | Here are some entertaining (amusing, humorous, funny) PDB codes<ref>Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.</ref>. | ||
*[[1and]] | *[[1and]] | ||
*[[1aok]] appears to be A OK. | *[[1aok]] appears to be A OK. | ||
*[[1ask]] | *[[1ask]] | ||
*[[1atp]] includes ATP (but [[2atp]] does not). | |||
*[[1bad]] yes, its a theoretical model. | *[[1bad]] yes, its a theoretical model. | ||
*[[1bah]] | *[[1bah]] | ||
*[[1big]] has only 37 amino acids. | *[[1big]] has only 37 amino acids. | ||
*[[1bra]] has a binding pocket. | *[[1bra]] has a binding pocket. | ||
*[[1bob]]'s 54 C-terminal residues were bobbed off. | |||
*[[1boo]] | *[[1boo]] | ||
*[[1bye]] | *[[1bye]] | ||
| Line 25: | Line 27: | ||
*[[1hot]] | *[[1hot]] | ||
*[[1ion]] contains Mg++ | *[[1ion]] contains Mg++ | ||
*[[1jim]] has been jimmied with sequence insertion codes. | |||
*[[1joe]] | |||
*[[1lie]] | *[[1lie]] | ||
*[[1loo]] | *[[1loo]] | ||
| Line 46: | Line 50: | ||
*[[1zyx]] | *[[1zyx]] | ||
*[[1zzz]] | *[[1zzz]] | ||
*[[2adp]] has no ADP, but [[1atp]] has ATP. | |||
*[[2bed]] was eventually put to bed. | *[[2bed]] was eventually put to bed. | ||
*[[2cuz]] has related entries (REMARK 900). | *[[2cuz]] has related entries (REMARK 900). | ||
Latest revision as of 19:14, 12 August 2024
Here are some entertaining (amusing, humorous, funny) PDB codes[1].
- 1and
- 1aok appears to be A OK.
- 1ask
- 1atp includes ATP (but 2atp does not).
- 1bad yes, its a theoretical model.
- 1bah
- 1big has only 37 amino acids.
- 1bra has a binding pocket.
- 1bob's 54 C-terminal residues were bobbed off.
- 1boo
- 1bye
- 1bzo missing a vowel.
- 1cif is available in PDB format.
- 1dam
- 1dog
- 1dud has an interesting trimeric biological unit.
- 1dul is very interesting.
- 1dum
- 1eat concerns an orally active compound.
- 1ego
- 1faq
- 1foo
- 1god
- 1goo
- 1hmm
- 1hot
- 1ion contains Mg++
- 1jim has been jimmied with sequence insertion codes.
- 1joe
- 1lie
- 1loo
- 1nmr was solved by solution NMR. Compare with 2nmr and 1xrd.
- 1oca
- 1off
- 1ohm
- 1ooh
- 1oop
- 1pdb is available in CIF format.
- 1pqs
- 1rid (turned out to be fraudulent)
- 1sux
- 1wad
- 1who
- 1wiz
- 1wow
- 1xrd was solved by solution NMR. Compare with 1nmr, 2xrd.
- 1xyz
- 1zap is a protease.
- 1zyx
- 1zzz
- 2adp has no ADP, but 1atp has ATP.
- 2bed was eventually put to bed.
- 2cuz has related entries (REMARK 900).
- 2err
- 2lok was released in 2012.
- 2nmr, 3nmr, 4nmr, 5nmr, 6nmr, 7nmr were all solved by X-ray diffraction, but check out 1nmr.
- 2pee
- 2poo
- 2xrd, 4xrd, 5xrd were all solved by X-ray diffraction. Compare with 1xrd, 1nmr.
- 3ric Surely a personal favorite for User:Eric Martz!
- 4arf Pet friendly.
- 4fit Don't forfeit your histidine triad (HIT)!
- 4you Just for you!
- 3way
- 6pax
Notes
- ↑ Thanks to Dan Bolser and the (now defunct) PDB Wiki for some of these examples.
