ConSurfDB vs. ConSurf: Difference between revisions
From Proteopedia
Jump to navigationJump to search
Eric Martz (talk | contribs) |
Eric Martz (talk | contribs) No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 228: | Line 228: | ||
18% | 18% | ||
</td><td> | </td><td> | ||
6.8 ± 0.12 | 6.8 ± 0.12* | ||
</td><td> | </td><td> | ||
7.6 ± 0.13 | 7.6 ± 0.13* | ||
</td><td> | </td><td> | ||
6.3 ± 0.17 | 6.3 ± 0.17* | ||
</td> | </td> | ||
</tr> | </tr> | ||
</table> | </table> | ||
*Averages are per atom for 88 between-chains salt-bridged atoms, and 140 within chain salt-bridged atoms. SEM's were calculated as standard deviation divided by the square root of the atom counts. Differences for APD 0.48 are statistically significant, p < 0.01<ref name="stats" />. | * *Averages are per atom for 88 between-chains salt-bridged atoms, and 140 within chain salt-bridged atoms. SEM's were calculated as standard deviation divided by the square root of the atom counts. Differences for APD 0.48 are statistically significant, p < 0.01<ref name="stats" />. | ||
*Salt bridges are Lys or Arg sidechain nitrogens within 4.0 Å of Asp or Glu sidechain oxygens. | *Salt bridges are Lys or Arg sidechain nitrogens within 4.0 Å of Asp or Glu sidechain oxygens. | ||
Examples of conserved patches on other proteins, revealed by ConSurf, will be found in the articles on | Examples of conserved patches on other proteins, revealed by ConSurf, will be found in the articles on | ||
| Line 305: | Line 303: | ||
# Displays the protein, colored by conservation, in interactive 3D, using the NGL Viewer, [[FirstGlance in Jmol]], [[Chimera]], or [[PyMOL]]. | # Displays the protein, colored by conservation, in interactive 3D, using the NGL Viewer, [[FirstGlance in Jmol]], [[Chimera]], or [[PyMOL]]. | ||
==References== | ==See Also== | ||
*[[ConSurf/Index]] provides links to all pages about evolutionary conservation and ConSurf in Proteopedia. | |||
==Notes & References== | |||
{{Reflist}} | {{Reflist}} | ||
