AlphaFold/Index: Difference between revisions
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==Interpreting Predictions== | ==Interpreting Predictions== | ||
*[[AlphaFold pLDDT and expected distance error]] | *[[AlphaFold pLDDT and expected distance error]] | ||
*[[FirstGlance/How_to_get_average_pLDDT_from_AlphaFold_models|How to get average pLDDT from AlphaFold models]]: When any subset of residues (such as a sequence range) is selected (using <i>Find</i>) in [[FirstGlance in Jmol]], listing the found residues reports their average pLDDT. | |||
*[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | *[[Calculating GDT TS]] the Global Distance Test Total Score, one of the metrics used for judging accuracy of predictions in the [[CASP]] competitions. | ||
*[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | *[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] includes a case that AlphaFold3 cannot predict. | ||
==Examples of Predictions== | ==Examples of Predictions== | ||
*[[AlphaFold2 examples from CASP 14]]. A detailed analysis of several AlphaFold predictions compared with [[Empirical models|empirically-determined structures]]. | *[[AlphaFold2 examples from CASP 14]]. A detailed 2021 analysis of several AlphaFold predictions compared with [[Empirical models|empirically-determined structures]]. | ||
*[[User:Eric Martz/AlphaFold3 case studies|AlphaFold3 case studies]] (November 2024) includes a case that AlphaFold3 cannot predict. | |||
==Uses of Predictions== | ==Uses of Predictions== | ||
