9hfu: Difference between revisions
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New page: '''Unreleased structure''' The entry 9hfu is ON HOLD Authors: Makhlouf, L., Zeqiraj, E. Description: Caprin1 peptide bound to SPOP MATH domain Category: Unreleased Structures [[Cat... |
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The | ==Caprin1 peptide bound to SPOP MATH domain== | ||
<StructureSection load='9hfu' size='340' side='right'caption='[[9hfu]], [[Resolution|resolution]] 1.70Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[9hfu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9HFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9HFU FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9hfu OCA], [https://pdbe.org/9hfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9hfu RCSB], [https://www.ebi.ac.uk/pdbsum/9hfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9hfu ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/D6RDG8_HUMAN D6RDG8_HUMAN] | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The adaptor protein, Speckle-type BTB/POZ protein (SPOP), recruits substrates to the cullin-3-subclass of E3 ligase for selective protein ubiquitylation. The Myddosome protein, Myeloid differentiation primary response 88 (MyD88), is ubiquitylated by the SPOP-based E3 ligase to negatively regulate immune signaling, however, the sequence rules for SPOP-mediated substrate engagement and degradation are not fully understood. Here, we show that MyD88 interacts with SPOP through a long degron that contains the established SPOP-binding consensus and an N-terminal site that we name the Q-motif. Based on sequence similarity to MyD88, we show that additional substrates, including Steroid receptor coactivator-3 (SRC-3), SET domain-containing protein 2 (SETD2) and Caprin1, engage SPOP in this manner. We show that the Q-motif is a critical determinant of these interactions in mammalian cells and determine X-ray crystal structures that show the molecular basis of SPOP associations with these proteins. These studies reveal a new consensus sequence for substrate-binding to SPOP that is necessary for substrate ubiquitylation, thus expanding the sequence rules required for SPOP-mediated E3 ligase substrate recognition. | |||
Sequence rules for a long SPOP-binding degron required for protein ubiquitylation.,Makhlouf L, Mishra M, Makhlouf H, Manfield I, Busino L, Zeqiraj E Biochem J. 2025 Mar 27:BCJ20253041. doi: 10.1042/BCJ20253041. PMID:40178506<ref>PMID:40178506</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 9hfu" style="background-color:#fffaf0;"></div> | ||
[[Category: Makhlouf | == References == | ||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Makhlouf L]] | |||
[[Category: Zeqiraj E]] | |||
