9n5g: Difference between revisions

(2 intermediate revisions by the same user not shown)

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~~'''Unreleased structure'''~~

~~The entry 9n5g is ON HOLD~~

==RNA polymerase II elongation complex with 8-oxoG at +1 site, ATP in both A- and E-site==

~~Authors: Oh, J., Wang, D.~~

== Structural highlights ==

<table><tr><td colspan='2'>[[9n5g]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9N5G OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=9N5G FirstGlance].

~~Description:~~ RNA polymerase II elongation complex with 8-oxoG at +1 site, ATP in both A-and E-site

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15Å</td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8OG:8-OXO-2-DEOXY-GUANOSINE-5-MONOPHOSPHATE'>8OG</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

[[Category: Oh, J]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=9n5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9n5g OCA], [https://pdbe.org/9n5g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9n5g RCSB], [https://www.ebi.ac.uk/pdbsum/9n5g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9n5g ProSAT]</td></tr>

[[Category: Wang, D]]

</table>

== Function ==

[https://www.uniprot.org/uniprot/RPAB3_YEAST RPAB3_YEAST] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Saccharomyces cerevisiae S288C]]

[[Category: Synthetic construct]]

[[Category: Oh J]]

[[Category: Wang D]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 9n5g is ON HOLD
+==RNA polymerase II elongation complex with 8-oxoG at +1 site, ATP in both A- and E-site==
+<StructureSection load='9n5g' size='340' side='right'caption='[[9n5g]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
-Authors: Oh, J., Wang, D.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[9n5g]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9N5G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9N5G FirstGlance]. <br>
-Description: RNA polymerase II elongation complex with 8-oxoG at +1 site, ATP in both A-and E-site
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15&#8491;</td></tr>
-[[Category: Unreleased Structures]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8OG:8-OXO-2-DEOXY-GUANOSINE-5-MONOPHOSPHATE'>8OG</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[Category: Oh, J]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9n5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9n5g OCA], [https://pdbe.org/9n5g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9n5g RCSB], [https://www.ebi.ac.uk/pdbsum/9n5g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9n5g ProSAT]</span></td></tr>
-[[Category: Wang, D]]
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RPAB3_YEAST RPAB3_YEAST] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Saccharomyces cerevisiae S288C]]
+[[Category: Synthetic construct]]
+[[Category: Oh J]]
+[[Category: Wang D]]