User:Matthew Chien/Sandbox 1: Difference between revisions

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'''Complement Component 1q'''
<StructureSection load='2jg9' size='350' side='right' caption=" crystallographic structure of C1q Globular Head  [[2JG9]]">
<StructureSection load='2jg9' size='350' side='right' caption=" crystallographic structure of C1q Globular Head  [[2JG9]]">
[[Image:C1q-binding.jpg|thumb|left|260px|C1q binding to antigen-antibody complex]]
[[Image:C1q-binding.jpg|thumb|left|260px|C1q binding to antigen-antibody complex]]
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C1q has been shown to partially facilitate the function of T-cells. The receptors gC1qR and cC1qR are both present on T-cells and serve as both activators and inhibitors. In the presence of immune complexes, C1q has shown to activate T-cells, acting as a bridge between the innate and adaptive immune system. In terms of inhibition, C1q is observed to suppress the activity of T-cells in certain environments to regulate the immune system and prevent autoimmune disease. C1q is known to bind to various phospholipids, namely phosphatidylserine, which is largely present on the surface of apoptotic cells. This promotes opsonization which leads to macrophage activation while also inhibiting T-cells to interact with the apoptotic cells. Over-activation of T-cells can lead to unnecessary harm within the body when their presence is not necessary and phagocytes are favored. <ref>PMID:15982298</ref><ref>PMID:20010915</ref>
C1q has been shown to partially facilitate the function of T-cells. The receptors gC1qR and cC1qR are both present on T-cells and serve as both activators and inhibitors. In the presence of immune complexes, C1q has shown to activate T-cells, acting as a bridge between the innate and adaptive immune system. In terms of inhibition, C1q is observed to suppress the activity of T-cells in certain environments to regulate the immune system and prevent autoimmune disease. C1q is known to bind to various phospholipids, namely phosphatidylserine, which is largely present on the surface of apoptotic cells. This promotes opsonization which leads to macrophage activation while also inhibiting T-cells to interact with the apoptotic cells. Over-activation of T-cells can lead to unnecessary harm within the body when their presence is not necessary and phagocytes are favored. <ref>PMID:15982298</ref><ref>PMID:20010915</ref>
== Structural Highlights ==
C1q is a 460 kDa protein complex composed of six collagen-like stems, each linked to a globular head. This produces a bouquet-like structure shown below. Each collagen-like stem is comprised of three separate chains that form a triple helix structure, totaling 18 polypeptide chains of three different types; A, B, and C. Each chain has an N-terminus in at the CLR and a <scene name='10/1078778/C-termini/1'>C-terminus</scene> at the globular head. Disulfide bonds link the N-terminus ends of A and B chains, with these dimers being linked to the C chains noncovalently. [[Image:Schematic-representation-of-structural-organization-of-human-C1q-and-of-C1-assembly-A.jpeg|thumb|right|520px|N-terminus of C1q]] These form the triple helices that attach to the globular head, making the bouquet-like structure. The globular heads are comprised of three independently folding domains, making them heterotrimeric. The globular heads are very compact and held together by both electrostatic and nonpolar interactions. Each globular head contains a <scene name='10/1078778/Calcium_ion/1'>calcium ion</scene>, responsible for target recognition properties and electrostatic stability. Residues <scene name='10/1078778/gC1qA_Ca_binding/2'>Gln177</scene> from chain A and <scene name='10/1078778/gC1qB_Ca_binding/1'>Asp172 and Gln179</scene> from chain B are highly conserved residues that are responsible for calcium ion binding. At pH 7.4, the Calcium ion is lost from the globular head, which contributes to IgG binding site recognition. <ref>PMID:23650384</ref><ref>PMID:16245926</ref>
[[Image:Frame apngframe1.png]]


== Active Site ==
== Active Site ==


=== Globular Head ===
=== Globular Head ===
C1q is observed to have many active sites depending on what it is interacting with, with most of these active sites being located on the globular head regions. The most researched interaction concerning C1q active site is its interaction with the antibody-antigen complex. C1q largely depends on ionic residues to create salt bridges and ionic bonds with the Cγ2 domain of IgG or the Cμ3 domain of IgM. The Cγ2 of IgG is located on the Fc region, which becomes aggregated upon complexing with antigens, allowing for increased affinity to C1q. <scene name='10/1078778/Gc1q_active_site_1/1'>Residues</scene> Glu198 -X- Asp200 -X- Lys202 on the A chain of the C1q globular head have been shown to be a consistent active site motif on C1q. This region forms an <scene name='10/1078778/Anti-parallel_beta_sheet/1'>antiparallel ß-sheet</scene>, promoting stability. Another active site has been observed on the B chain of the globular head region (ghB) at <scene name='10/1078778/114_129_c1q_active_site/1'>residues</scene> 114-129. The principle residues involved in binding are the Arg114 and Arg129. These residues interact with charged residues on IgG, mostly Lys and Glu. A common motif seen on IgG that these active sites interact with is Glu - X - Lys - X - Lys, located at <scene name='10/1078778/Igg_binding_site/2'>residues</scene> 318, 320, and 322 respectively. This is a common motif seen on many proteins associated with the immune system, which enforces the observation that C1q can interact with many different proteins in many different contexts. One study showed that an arginine or lysine is required at positions 320 and 322 and a glutamic acid or threonine is required at position 318 in order for C1q to successfully bind. This suggests that a hydrogen bond at position 318 and an ionic interaction at positions 320 and 322 are required for C1q to bind to IgG and other epitopes. <ref>PMID:8486696</ref><ref>PMID:3258649</ref>
C1q is observed to have many active sites depending on what it is interacting with, with most of these active sites being located on the globular head regions. The most researched interaction concerning C1q active site is its interaction with the antibody-antigen complex. C1q largely depends on ionic residues to create salt bridges and ionic bonds with the Cγ2 domain of IgG or the Cμ3 domain of IgM. The Cγ2 of IgG is located on the Fc region, which becomes aggregated upon complexing with antigens, allowing for increased affinity to C1q. <scene name='10/1078778/Gc1q_active_site_1/1'>Residues</scene> Glu198 -X- Asp200 -X- Lys202 on the A chain of the C1q globular head have been shown to be a consistent active site motif on C1q. This region forms an <scene name='10/1078778/Anti-parallel_beta_sheet/1'>antiparallel ß-sheet</scene>, promoting stability. Another active site has been observed on the B chain of the globular head region (ghB) at <scene name='10/1078778/114_129_c1q_active_site/1'>residues</scene> 114-129. The principle residues involved in binding are the Arg114 and Arg129. These active site residues interact with charged residues on IgG, mostly Lys and Glu/Asp. A common motif seen on IgG that these active sites interact with is Glu - X - Lys - X - Lys, located at <scene name='10/1078778/Igg_binding_site/2'>residues</scene> 318, 320, and 322 respectively. This is a common motif seen on many proteins associated with the immune system, which enforces the observation that C1q can interact with many different proteins in many different contexts. One study showed that an arginine or lysine is required at positions 320 and 322 and a glutamic acid or threonine is required at position 318 in order for C1q to successfully bind. This suggests that a hydrogen bond at position 318 and an ionic interaction at positions 320 and 322 are required for C1q to bind to IgG and other epitopes. <ref>PMID:8486696</ref><ref>PMID:3258649</ref>


=== Collagen-Like Region ===
=== Collagen-Like Region ===
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An overabundance of C1q has shown to correlate with the development of neurodegenerative diseases and loss of cognitive function. Higher age groups are seen to have larger levels of C1q, especially in their brain. This buildup mainly occurs because of poorer activity in synaptic clearing of C1q bound to neuronal RNA-binding proteins called neuronal ribonucleoprotein complexes, affecting protein homeostasis in the brain and decreasing cognitive function. C1q is involved in pruning synapses in developing brains by tagging the synapses for phagocytosis by microglia. Elevated concentrations of C1q in the synapses has been correlated with overactivity of microglia when provoked by brain injury or a series of strokes. Most cells in the body have complement inhibiting agents to regulate complement activity, whereas nerve cells lack these complement inhibitors. Astrocytes are known to secrete C1q when provoked by infections or damage to the central nervous system, and an overproduction of these can lead to over inflammation in the brain by the complement cascade and synapses loss, both fundamental components of Alzheimer's disease and various other neurodegenerative diseases. <ref>PMID:23946404</ref><ref>PMID:38942014</ref><ref>PMID:37033981</ref>
An overabundance of C1q has shown to correlate with the development of neurodegenerative diseases and loss of cognitive function. Higher age groups are seen to have larger levels of C1q, especially in their brain. This buildup mainly occurs because of poorer activity in synaptic clearing of C1q bound to neuronal RNA-binding proteins called neuronal ribonucleoprotein complexes, affecting protein homeostasis in the brain and decreasing cognitive function. C1q is involved in pruning synapses in developing brains by tagging the synapses for phagocytosis by microglia. Elevated concentrations of C1q in the synapses has been correlated with overactivity of microglia when provoked by brain injury or a series of strokes. Most cells in the body have complement inhibiting agents to regulate complement activity, whereas nerve cells lack these complement inhibitors. Astrocytes are known to secrete C1q when provoked by infections or damage to the central nervous system, and an overproduction of these can lead to over inflammation in the brain by the complement cascade and synapses loss, both fundamental components of Alzheimer's disease and various other neurodegenerative diseases. <ref>PMID:23946404</ref><ref>PMID:38942014</ref><ref>PMID:37033981</ref>


== Structural Highlights ==
C1q is a 460 kDa protein complex composed of six collagen-like stems, each linked to a globular head. This produces a bouquet-like structure shown below. Each collagen-like stem is comprised of three separate chains that form a triple helix structure, totaling 18 polypeptide chains of three different types; A, B, and C. Each chain has an N-terminus in at the CLR and a <scene name='10/1078778/C-termini/1'>C-terminus</scene> at the globular head. Disulfide bonds link the N-terminus ends of A and B chains, with these dimers being linked to the C chains noncovalently. [[Image:Schematic-representation-of-structural-organization-of-human-C1q-and-of-C1-assembly-A.jpeg|thumb|right|520px|N-terminus of C1q]] These form the triple helices that attach to the globular head, making the bouquet-like structure. The globular heads are comprised of three independently folding domains, making them heterotrimeric. The globular heads are very compact and held together by both electrostatic and nonpolar interactions. Each globular head contains a <scene name='10/1078778/Calcium_ion/1'>calcium ion</scene>, responsible for target recognition properties and electrostatic stability. At pH 7.4, the Calcium ion is lost from the globular head, which contributes to IgG binding site recognition. <ref>PMID:23650384</ref><ref>PMID:16245926</ref>
[[Image:Frame apngframe1.png]]
== Additional Resources ==
== Additional Resources ==
*[https://www.youtube.com/watch?v=IUDSWPvfHgU Classical Pathway Activation] animation of C1q binding to IgG, initiating the classical pathway of the complement system.
*[https://www.youtube.com/watch?v=IUDSWPvfHgU Classical Pathway Activation] animation of C1q binding to IgG, initiating the classical pathway of the complement system.

Latest revision as of 19:44, 1 May 2025

Complement Component 1q

crystallographic structure of C1q Globular Head 2JG9

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References

Proteopedia Page Contributors and Editors (what is this?)

Matthew Chien