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[[Image:1wni.gif|left|200px]]
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{{STRUCTURE_1wni|  PDB=1wni  |  SCENE=  }}
'''Crystal Structure of H2-Proteinase'''


==Crystal Structure of H2-Proteinase==
<StructureSection load='1wni' size='340' side='right'caption='[[1wni]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1wni]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Protobothrops_flavoviridis Protobothrops flavoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WNI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WNI FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wni FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wni OCA], [https://pdbe.org/1wni PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wni RCSB], [https://www.ebi.ac.uk/pdbsum/1wni PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wni ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/VM1T2_PROFL VM1T2_PROFL] Major venom non-hemorrhagic metalloproteinase.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wn/1wni_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wni ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The crystal structure of the zinc-protease, H2-proteinase, isolated from the venom of Trimeresurus flavoviridis has been determined. The crystallographic R factor is 0.176 for 10,635 reflections with Fobs &gt; 2sigma(Fobs) in the 8.0 to 2.2 Angstrom resolution range. The enzyme has two domains with a cleft in which a catalytic zinc atom is located. The N-terminal domain is composed of four helices around a central five-stranded beta-sheet. The irregularly folded C-terminal domain contains one helix and two disulfide bridges. These two domains are linked by a disulfide bridge. In the zinc environment, the catalytic zinc atom forms a distorted tetrahedral coordination with three histidines and one catalytic water molecule, and the methionine-containing turn is structurally conserved. These are distinctive features of the metzincins, one of the zinc metalloprotease superfamilies. The entire structure shows good agreement with that of two Crotalus snake venom proteases, adamalysin II and atrolysin C. The H2-proteinase, however, contains no structural calcium ions, and differences of disulfide configurations and the coordination of the catalytic water molecule exist as compared with the other two proteases.


==Overview==
Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis.,Kumasaka T, Yamamoto M, Moriyama H, Tanaka N, Sato M, Katsube Y, Yamakawa Y, Omori-Satoh T, Iwanaga S, Ueki T J Biochem. 1996 Jan;119(1):49-57. PMID:8907175<ref>PMID:8907175</ref>
The crystal structure of the zinc-protease, H2-proteinase, isolated from the venom of Trimeresurus flavoviridis has been determined. The crystallographic R factor is 0.176 for 10,635 reflections with Fobs &gt; 2sigma(Fobs) in the 8.0 to 2.2 Angstrom resolution range. The enzyme has two domains with a cleft in which a catalytic zinc atom is located. The N-terminal domain is composed of four helices around a central five-stranded beta-sheet. The irregularly folded C-terminal domain contains one helix and two disulfide bridges. These two domains are linked by a disulfide bridge. In the zinc environment, the catalytic zinc atom forms a distorted tetrahedral coordination with three histidines and one catalytic water molecule, and the methionine-containing turn is structurally conserved. These are distinctive features of the metzincins, one of the zinc metalloprotease superfamilies. The entire structure shows good agreement with that of two Crotalus snake venom proteases, adamalysin II and atrolysin C. The H2-proteinase, however, contains no structural calcium ions, and differences of disulfide configurations and the coordination of the catalytic water molecule exist as compared with the other two proteases.


==About this Structure==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
1WNI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Trimeresurus_flavoviridis Trimeresurus flavoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WNI OCA].
</div>
<div class="pdbe-citations 1wni" style="background-color:#fffaf0;"></div>


==Reference==
==See Also==
Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis., Kumasaka T, Yamamoto M, Moriyama H, Tanaka N, Sato M, Katsube Y, Yamakawa Y, Omori-Satoh T, Iwanaga S, Ueki T, J Biochem. 1996 Jan;119(1):49-57. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8907175 8907175]
*[[Proteinase 3D structures|Proteinase 3D structures]]
[[Category: Single protein]]
== References ==
[[Category: Trimerelysin II]]
<references/>
[[Category: Trimeresurus flavoviridis]]
__TOC__
[[Category: Iwanaga, S.]]
</StructureSection>
[[Category: Katsube, Y.]]
[[Category: Large Structures]]
[[Category: Kumasaka, T.]]
[[Category: Protobothrops flavoviridis]]
[[Category: Moriyama, H.]]
[[Category: Iwanaga S]]
[[Category: Omori-Satoh, T.]]
[[Category: Katsube Y]]
[[Category: Sato, M.]]
[[Category: Kumasaka T]]
[[Category: Tanaka, N.]]
[[Category: Moriyama H]]
[[Category: Ueki, T.]]
[[Category: Omori-Satoh T]]
[[Category: Yamakawa, Y.]]
[[Category: Sato M]]
[[Category: Yamamoto, M.]]
[[Category: Tanaka N]]
[[Category: Metalloprotease]]
[[Category: Ueki T]]
[[Category: Metzincin]]
[[Category: Yamakawa Y]]
[[Category: Snake venom]]
[[Category: Yamamoto M]]
[[Category: Zinc]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 13:54:56 2008''

Latest revision as of 00:38, 21 November 2024

Crystal Structure of H2-Proteinase

1wni, resolution 2.20Å

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