User:Wayne Decatur/mof dev: Difference between revisions

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Wayne Decatur (talk | contribs)
Editor, widgeteditor
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fix initial scene
Wayne Decatur (talk | contribs)
Editor, widgeteditor
7,824 edits
add additional spacefill toggle
 
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When the repeats of this 4-connected network building block are shown connected to others, the crystalline lattice appears.<br/>
When the repeats of this 4-connected network building block are shown connected to others, the crystalline lattice appears.<br/>
Viewing the <scene name='10/1092924/Csd_entry_jarmeu_1x1x3_set/4'>the CSD entry JARMEU as a 1x1x3 set of the metal organic framework</scene> illustrates this.<br/>   
Viewing the <scene name='10/1092924/Csd_entry_jarmeu_1x1x3_set/4'>the CSD entry JARMEU as a 1x3x3 set of the metal organic framework</scene> illustrates this.<br/>   
The large cavities are visible as the lattice layers onto itself as the view of the structure rotates. <br/>
The large cavities are visible as the lattice layers onto itself as the view of the structure rotates. <br/>
The cavities would contain anions and solvent that are not shown in this crystal structure as they'd be freely moving and randomly distributed.
The cavities would contain anions and solvent that are not shown in this crystal structure as they'd be freely moving and randomly distributed.


The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>
The extensive crystalline nature with the large cavities becomes more apparent if we consider more of the repeated building blocks. <br/>
<scene name='10/1092924/Csd_entry_jarmeu_1x3x3_plane/4'>The CSD entry JARMEU as a 1x3x3 plane of the metal organic framework</scene>. (Substantial patience required when loading this scene; it is suggested to only do that after you have examined the others.)
<scene name='10/1092924/Csd_entry_jarmeu_lattice/4'>The CSD entry JARMEU as a 1x4x6 lattice of the metal organic framework</scene>.
 
<jmol>
<jmolCheckbox>
  <scriptWhenChecked>hide all and not cell=555;</scriptWhenChecked>
  <scriptWhenUnchecked>display all;</scriptWhenUnchecked>
  <checked>false</checked>
  <!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
  <text>Toggle to limit to what is in just key cell vs. current lattice network context</text>
</jmolCheckbox>
</jmol>
 
<jmol>
<jmolCheckbox>
  <scriptWhenChecked>select all; spacefill on;</scriptWhenChecked>
  <scriptWhenUnchecked>select all; spacefill 0.35; select hydrogen; spacefill 0.25;</scriptWhenUnchecked>
  <checked>false</checked>
  <!-- <checked></checked> set it to false or delete it or comment it out as <checked>false</checked> or <checked> </checked>still show as checked-->
  <text>CPK Spacefll mode</text>
</jmolCheckbox>
</jmol>


<jmol>
<jmol>
Line 59: Line 79:


</StructureSection>
</StructureSection>
==Technical Details==
The views featuring the 1x1x3 set and the 1x3x3 plane were built using [https://chemapps.stolaf.edu/jmol/jsmol/jcse/explore.htm the Jmol Crystal Symmetry Explorer] to examine [https://www.ccdc.cam.ac.uk/structures/Search?Ccdcid=JARMEU&DatabaseToSearch=CSD CSD Entry: JARMEU].


==References==
==References==

Latest revision as of 21:16, 12 October 2025

A Metal–organic framework structure: the CSD entry JARMEU

Drag the structure with the mouse to rotate

References


See also

Proteopedia Page Contributors and Editors (what is this?)

Wayne Decatur

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