1zxq: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: left|200px<br /> <applet load="1zxq" size="450" color="white" frame="true" align="right" spinBox="true" caption="1zxq, resolution 2.2Å" /> '''THE CRYSTAL STRUCTUR...
 
OCA (talk | contribs)
No edit summary
 
(15 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1zxq.gif|left|200px]]<br />
<applet load="1zxq" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1zxq, resolution 2.2&Aring;" />
'''THE CRYSTAL STRUCTURE OF ICAM-2'''<br />


==Overview==
==THE CRYSTAL STRUCTURE OF ICAM-2==
Recognition by integrin proteins on the cell surface regulates the, adhesive interactions between cells and their surroundings. The structure, of the 'I' domain that is found in some but not all integrins, has been, determined. However, the only integrin ligands for which structures are, known, namely fibronectin and VCAM-1, are recognized by integrins that, lack I domains. The intercellular adhesion molecules ICAM-1, 2 and 3 are, like VCAM-1, members of the immunoglobulin superfamily (IgSF), but they, are recognized by an I domain-containing integrin, lymphocyte-function-associated antigen 1 (LFA-1, or CD11a/CD18). Here we, present the crystal structure of the extracellular region of ICAM-2. The, glutamic acid residue at position 37 is critical for LFA-1 binding and is, proposed to coordinate the Mg2+ ion in the I domain; this Glu 37 is, surrounded by a relatively flat recognition surface and lies in a, beta-strand, whereas the critical aspartic acid residue in VCAM-1 and, fibronectin lie in protruding loops. This finding suggests that there are, differences in the architecture of recognition sites between integrins, that contain or lack I domains. A bend between domains 1 and 2 of ICAM-2, and a tripod-like arrangement of N-linked glycans in the membrane-proximal, region of domain 2 may be important for presenting the recognition surface, to LFA-1. A model of ICAM-1 based on the ICAM-2 structure provides a, framework for understanding its recognition by pathogens.
<StructureSection load='1zxq' size='340' side='right'caption='[[1zxq]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZXQ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxq OCA], [https://pdbe.org/1zxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zxq RCSB], [https://www.ebi.ac.uk/pdbsum/1zxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxq ProSAT]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/1zxq_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zxq ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Recognition by integrin proteins on the cell surface regulates the adhesive interactions between cells and their surroundings. The structure of the 'I' domain that is found in some but not all integrins, has been determined. However, the only integrin ligands for which structures are known, namely fibronectin and VCAM-1, are recognized by integrins that lack I domains. The intercellular adhesion molecules ICAM-1, 2 and 3 are, like VCAM-1, members of the immunoglobulin superfamily (IgSF), but they are recognized by an I domain-containing integrin, lymphocyte-function-associated antigen 1 (LFA-1, or CD11a/CD18). Here we present the crystal structure of the extracellular region of ICAM-2. The glutamic acid residue at position 37 is critical for LFA-1 binding and is proposed to coordinate the Mg2+ ion in the I domain; this Glu 37 is surrounded by a relatively flat recognition surface and lies in a beta-strand, whereas the critical aspartic acid residue in VCAM-1 and fibronectin lie in protruding loops. This finding suggests that there are differences in the architecture of recognition sites between integrins that contain or lack I domains. A bend between domains 1 and 2 of ICAM-2 and a tripod-like arrangement of N-linked glycans in the membrane-proximal region of domain 2 may be important for presenting the recognition surface to LFA-1. A model of ICAM-1 based on the ICAM-2 structure provides a framework for understanding its recognition by pathogens.


==About this Structure==
Crystal structure of ICAM-2 reveals a distinctive integrin recognition surface.,Casasnovas JM, Springer TA, Liu JH, Harrison SC, Wang JH Nature. 1997 May 15;387(6630):312-5. PMID:9153399<ref>PMID:9153399</ref>
1ZXQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ZXQ OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Crystal structure of ICAM-2 reveals a distinctive integrin recognition surface., Casasnovas JM, Springer TA, Liu JH, Harrison SC, Wang JH, Nature. 1997 May 15;387(6630):312-5. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9153399 9153399]
</div>
[[Category: Homo sapiens]]
<div class="pdbe-citations 1zxq" style="background-color:#fffaf0;"></div>
[[Category: Single protein]]
[[Category: Casasnovas, J.M.]]
[[Category: Harrison, S.C.]]
[[Category: Springer, T.A.]]
[[Category: Wang, J.H.]]
[[Category: cell adhesion]]
[[Category: glycoprotein]]
[[Category: immunoglobulin fold]]
[[Category: repeat]]
[[Category: signal]]
[[Category: transmembrane]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 20:42:58 2007''
==See Also==
*[[Intercellular adhesion molecule|Intercellular adhesion molecule]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Casasnovas JM]]
[[Category: Harrison SC]]
[[Category: Springer TA]]
[[Category: Wang J-H]]

Latest revision as of 07:45, 23 October 2024

THE CRYSTAL STRUCTURE OF ICAM-2

1zxq, resolution 2.20Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA