9t46: Difference between revisions

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'''Unreleased structure'''


The entry 9t46 is ON HOLD  until Paper Publication
==Crystal structure of the Fab 40G5c in complex with a CD3 epsilon peptide==
<StructureSection load='9t46' size='340' side='right'caption='[[9t46]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[9t46]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=9T46 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=9T46 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=9t46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=9t46 OCA], [https://pdbe.org/9t46 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=9t46 RCSB], [https://www.ebi.ac.uk/pdbsum/9t46 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=9t46 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CD3E_HUMAN CD3E_HUMAN] The CD3 complex mediates signal transduction.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The development of anti-CD3 antibody-based T cell engager therapeutics has improved the treatment of various malignancies, yet the challenge of achieving tumor-specific targeting while minimizing on-target off-tumor effects in normal tissues remains a substantial hurdle. One promising strategy to address this issue involves engineering antibodies with conditional pH-dependent binding affinities, capitalizing on the acidic microenvironment characteristics of tumors (pH ~ 6.5-6.8) compared to the neutral pH of healthy tissues (pH ~ 7.4). In this study, we focus on the pH-engineering of antibody binders against the human CD3 antigen, a critical component of T cell activation, to achieve preferential binding at acidic pH. Using molecular dynamics (MD) simulations on the reported CD3varepsilon antibody binder 40G5c, we shed light on possible molecular mechanisms of the pH-responsiveness of key mutations and their impact on the overall binder structure at physiological or acidic pH. Our study highlights how MD has emerged as a powerful tool to guide and explain intrinsic pH-dependent molecular mechanisms in antibody engineering. Lastly, we report that our engineered CD3 binders preferentially bind and activate T cells under acidic pH conditions and display favorable affinity and pH-window profiles.


Authors:  
Engineering of acidic pH-responsive anti-CD3 binding antibodies.,La Sala G, Kroell KB, Pincha M, Gassner C, Deho L, Moessner E, Gueripel X, Borin N, Classen M, Benz J, Bujotzek A, Klein C, Georges G, Hugenmatter A, Liedl KR, Vangone A MAbs. 2026 Dec;18(1):2658902. doi: 10.1080/19420862.2026.2658902. Epub 2026 Apr , 27. PMID:42046367<ref>PMID:42046367</ref>


Description:  
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 9t46" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Benz J]]
[[Category: Bujotzek A]]
[[Category: Classen M]]
[[Category: Frimoser-Grunschober A]]
[[Category: Gassner C]]
[[Category: Georges G]]
[[Category: Hugenmatter A]]
[[Category: Klein C]]
[[Category: Kroell KB]]
[[Category: La Sala G]]
[[Category: Liedl KR]]
[[Category: Moessner E]]
[[Category: Pincha M]]
[[Category: Vangone A]]
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