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New page: left|200px<br /> <applet load="2af2" size="450" color="white" frame="true" align="right" spinBox="true" caption="2af2" /> '''Solution structure of disulfide reduced and...
 
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[[Image:2af2.gif|left|200px]]<br />
<applet load="2af2" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2af2" />
'''Solution structure of disulfide reduced and copper depleted Human Superoxide Dismutase'''<br />


==Overview==
==Solution structure of disulfide reduced and copper depleted Human Superoxide Dismutase==
SOD1 has to undergo several post-translational modifications before, reaching its mature form. The protein requires insertion of zinc and, copper atoms, followed by the formation of a conserved S-S bond between, Cys-57 and Cys-146 (human numbering), which makes the protein fully, active. In this report an NMR structural investigation of the reduced, SH-SH form of thermostable E,Zn-as-SOD1 (E is empty; as is C6A, C111S) is, reported, characterizing the protein just before the last step leading to, the mature form. The structure is compared with that of the oxidized S-S, form as well as with that of the yeast SOD1 complexed with its copper, chaperone, CCS. Local conformational rearrangements upon disulfide bridge, reduction are localized in the region near Cys-57 that is completely, exposed to the solvent in the present structure, at variance with the, oxidized forms. There is a local disorder around Cys-57 that may serve for, protein-protein recognition and may possibly be involved in intermolecular, S-S bonds in familial amyotrophic lateral sclerosis-related SOD1 mutants., The structure allows us to further discuss the copper loading mechanism in, SOD1.
<StructureSection load='2af2' size='340' side='right'caption='[[2af2]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2af2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AF2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2af2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2af2 OCA], [https://pdbe.org/2af2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2af2 RCSB], [https://www.ebi.ac.uk/pdbsum/2af2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2af2 ProSAT]</span></td></tr>
</table>
== Disease ==
[https://www.uniprot.org/uniprot/SODC_HUMAN SODC_HUMAN] Defects in SOD1 are the cause of amyotrophic lateral sclerosis type 1 (ALS1) [MIM:[https://omim.org/entry/105400 105400]. ALS1 is a familial form of amyotrophic lateral sclerosis, a neurodegenerative disorder affecting upper and lower motor neurons and resulting in fatal paralysis. Sensory abnormalities are absent. Death usually occurs within 2 to 5 years. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of cases leading to familial forms.<ref>PMID:12963370</ref> <ref>PMID:19741096</ref> <ref>PMID:8528216</ref> <ref>PMID:8682505</ref> <ref>PMID:9541385</ref> <ref>PMID:12754496</ref> <ref>PMID:15056757</ref> <ref>PMID:18378676</ref> [:]<ref>PMID:8446170</ref> <ref>PMID:8351519</ref> <ref>PMID:8179602</ref> <ref>PMID:7980516</ref> <ref>PMID:8069312</ref> <ref>PMID:7951252</ref> <ref>PMID:7881433</ref> <ref>PMID:7836951</ref> <ref>PMID:7997024</ref> <ref>PMID:7870076</ref> <ref>PMID:7887412</ref> <ref>PMID:7795609</ref> <ref>PMID:7655468</ref> <ref>PMID:7655469</ref> <ref>PMID:7655471</ref> <ref>PMID:7700376</ref> <ref>PMID:7647793</ref> <ref>PMID:7501156</ref> <ref>PMID:7496169</ref> <ref>PMID:8938700</ref> <ref>PMID:8907321</ref> <ref>PMID:8990014</ref> <ref>PMID:9101297</ref> <ref>PMID:9455977</ref> <ref>PMID:10732812</ref> <ref>PMID:9131652</ref> <ref>PMID:10400992</ref> <ref>PMID:10430435</ref> <ref>PMID:11535232</ref> <ref>PMID:11369193</ref> <ref>PMID:12402272</ref> <ref>PMID:12145308</ref> <ref>PMID:14506936</ref> <ref>PMID:18552350</ref> <ref>PMID:18301754</ref> <ref>PMID:21247266</ref> <ref>PMID:21220647</ref>
== Function ==
[https://www.uniprot.org/uniprot/SODC_HUMAN SODC_HUMAN] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2af2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2af2 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
SOD1 has to undergo several post-translational modifications before reaching its mature form. The protein requires insertion of zinc and copper atoms, followed by the formation of a conserved S-S bond between Cys-57 and Cys-146 (human numbering), which makes the protein fully active. In this report an NMR structural investigation of the reduced SH-SH form of thermostable E,Zn-as-SOD1 (E is empty; as is C6A, C111S) is reported, characterizing the protein just before the last step leading to the mature form. The structure is compared with that of the oxidized S-S form as well as with that of the yeast SOD1 complexed with its copper chaperone, CCS. Local conformational rearrangements upon disulfide bridge reduction are localized in the region near Cys-57 that is completely exposed to the solvent in the present structure, at variance with the oxidized forms. There is a local disorder around Cys-57 that may serve for protein-protein recognition and may possibly be involved in intermolecular S-S bonds in familial amyotrophic lateral sclerosis-related SOD1 mutants. The structure allows us to further discuss the copper loading mechanism in SOD1.


==Disease==
Human SOD1 before harboring the catalytic metal: solution structure of copper-depleted, disulfide-reduced form.,Banci L, Bertini I, Cantini F, D'Amelio N, Gaggelli E J Biol Chem. 2006 Jan 27;281(4):2333-7. Epub 2005 Nov 14. PMID:16291742<ref>PMID:16291742</ref>
Known disease associated with this structure: Amyotrophic lateral sclerosis, due to SOD1 deficiency OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=147450 147450]]


==About this Structure==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
2AF2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with ZN as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2AF2 OCA].
</div>
<div class="pdbe-citations 2af2" style="background-color:#fffaf0;"></div>


==Reference==
==See Also==
Human SOD1 before harboring the catalytic metal: solution structure of copper-depleted, disulfide-reduced form., Banci L, Bertini I, Cantini F, D'Amelio N, Gaggelli E, J Biol Chem. 2006 Jan 27;281(4):2333-7. Epub 2005 Nov 14. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16291742 16291742]
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Superoxide dismutase]]
[[Category: Banci L]]
[[Category: Amelio, N.D.]]
[[Category: Bertini I]]
[[Category: Banci, L.]]
[[Category: Cantini F]]
[[Category: Bertini, I.]]
[[Category: D'Amelio N]]
[[Category: Cantini, F.]]
[[Category: Gaggelli E]]
[[Category: Gaggelli, E.]]
[[Category: SPINE, Structural.Proteomics.in.Europe.]]
[[Category: ZN]]
[[Category: copper depleted protein]]
[[Category: disulfide bond reduced]]
[[Category: homodimeric protein]]
[[Category: human superoxide dismutase]]
[[Category: nmr]]
[[Category: solution structure]]
[[Category: spine]]
[[Category: structural genomics]]
[[Category: structural proteomics in europe]]
 
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Latest revision as of 08:17, 15 May 2024

Solution structure of disulfide reduced and copper depleted Human Superoxide Dismutase

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