11fc: Difference between revisions
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Created page with "'''Unreleased structure''' The entry 11fc is ON HOLD Authors: Tan, K., Tse Dinh, Y.K. Description: E.Coli DNA Topoisomerase III with a 8mer ssDNA oligo Category: Unreleased Structures Category: Tan, K Category: Tse Dinh, Y.K" |
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==E.Coli DNA Topoisomerase 3 in complex with an 8mer ssDNA oligo CTGAACTT== | |||
<StructureSection load='11fc' size='340' side='right'caption='[[11fc]], [[Resolution|resolution]] 2.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[11fc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=11FC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=11FC FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |||
[[Category: | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr> | ||
[[Category: Tan | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=11fc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=11fc OCA], [https://pdbe.org/11fc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=11fc RCSB], [https://www.ebi.ac.uk/pdbsum/11fc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=11fc ProSAT]</span></td></tr> | ||
[[Category: Tse Dinh | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/TOP3_ECOLI TOP3_ECOLI] Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. TOP3 is a potent decatenase.<ref>PMID:2553698</ref> <ref>PMID:6326814</ref> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli]] | |||
[[Category: Large Structures]] | |||
[[Category: Synthetic construct]] | |||
[[Category: Tan K]] | |||
[[Category: Tse Dinh YC]] | |||
Latest revision as of 08:01, 29 April 2026
E.Coli DNA Topoisomerase 3 in complex with an 8mer ssDNA oligo CTGAACTT
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