2cmu: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2cmu.gif|left|200px]]


<!--
==Crystal structure of a putative peptidyl-arginine deiminase==
The line below this paragraph, containing "STRUCTURE_2cmu", creates the "Structure Box" on the page.
<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2cmu|  PDB=2cmu |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [https://pdbe.org/2cmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [https://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
 
</table>
'''CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDYL-ARGININE DEIMINASE'''
== Function ==
 
[https://www.uniprot.org/uniprot/O24890_HELPY O24890_HELPY]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2CMU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA].  
Check<jmol>
[[Category: Helicobacter pylori]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/2cmu_consurf.spt"</scriptWhenChecked>
[[Category: Burley, S K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Kniewel, R.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Lima, C D.]]
  </jmolCheckbox>
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cmu ConSurf].
[[Category: Rajashankar, K R.]]
<div style="clear:both"></div>
[[Category: Solorzano, V.]]
__TOC__
[[Category: Hydrolase]]
</StructureSection>
[[Category: Hypothetical protein]]
[[Category: Helicobacter pylori 26695]]
[[Category: Jhp0042]]
[[Category: Large Structures]]
[[Category: New york structural genomix research consortium]]
[[Category: Kniewel R]]
[[Category: Nysgxrc]]
[[Category: Lima CD]]
[[Category: Peptidyl-arginine deiminase]]
[[Category: Rajashankar KR]]
[[Category: Protein structure initiative]]
[[Category: Solorzano V]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: T1664]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 22:32:15 2008''
Retrieved from "https://proteopedia.org/2cmu"