2dmr: Difference between revisions

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[[Image:2dmr.gif|left|200px]]


<!--
==DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS==
The line below this paragraph, containing "STRUCTURE_2dmr", creates the "Structure Box" on the page.
<StructureSection load='2dmr' size='340' side='right'caption='[[2dmr]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dmr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DMR FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=PGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>PGD</scene>, <scene name='pdbligand=SO2:SULFUR+DIOXIDE'>SO2</scene></td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dmr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dmr OCA], [https://pdbe.org/2dmr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dmr RCSB], [https://www.ebi.ac.uk/pdbsum/2dmr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dmr ProSAT]</span></td></tr>
{{STRUCTURE_2dmr|  PDB=2dmr  |  SCENE= }}
</table>
 
== Function ==
'''DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS'''
[https://www.uniprot.org/uniprot/DSTOR_RHOCA DSTOR_RHOCA] Catalyzes the reduction of dimethyl sulfoxide (DMSO) and trimethylamine N-oxide (TMAO) to dimethyl sulfide (DMS) and trimethylamine, respectively. The terminal DMSO reductase can also use various sulfoxides and N-oxide compounds as terminal electron acceptor in addition to DMSO and TMAO.<ref>PMID:2001248</ref> <ref>PMID:8856102</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2DMR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DMR OCA].  
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/2dmr_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dmr ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Rhodobacter capsulatus]]
[[Category: Rhodobacter capsulatus]]
[[Category: Single protein]]
[[Category: Bailey S]]
[[Category: Bailey, S.]]
[[Category: Mcalpine AS]]
[[Category: Mcalpine, A S.]]
[[Category: Dithionite]]
[[Category: Dmso]]
[[Category: Molybdopterin]]
[[Category: Monoxo]]
[[Category: Reductase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 00:46:05 2008''

Latest revision as of 09:57, 21 December 2022

DITHIONITE REDUCED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS

2dmr, resolution 2.80Å

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