2j7z: Difference between revisions
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New page: left|200px<br /> <applet load="2j7z" size="450" color="white" frame="true" align="right" spinBox="true" caption="2j7z, resolution 1.95Å" /> '''CRYSTAL STRUCTURE O... |
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== | ==Crystal Structure of recombinant Human Stromal Cell-Derived Factor- 1alpha== | ||
<StructureSection load='2j7z' size='340' side='right'caption='[[2j7z]], [[Resolution|resolution]] 1.95Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2j7z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J7Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2J7Z FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2j7z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j7z OCA], [https://pdbe.org/2j7z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2j7z RCSB], [https://www.ebi.ac.uk/pdbsum/2j7z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2j7z ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/SDF1_HUMAN SDF1_HUMAN] Chemoattractant active on T-lymphocytes, monocytes, but not neutrophils. Activates the C-X-C chemokine receptor CXCR4 to induce a rapid and transient rise in the level of intracellular calcium ions and chemotaxis. Also binds to another C-X-C chemokine receptor CXCR7, which activates the beta-arrestin pathway and acts as a scavenger receptor for SDF-1. SDF-1-beta(3-72) and SDF-1-alpha(3-67) show a reduced chemotactic activity. Binding to cell surface proteoglycans seems to inhibit formation of SDF-1-alpha(3-67) and thus to preserve activity on local sites. Acts as a positive regulator of monocyte migration and a negative regulator of monocyte adhesion via the LYN kinase. Stimulates migration of monocytes and T-lymphocytes through its receptors, CXCR4 and CXCR7, and decreases monocyte adherence to surfaces coated with ICAM-1, a ligand for beta-2 integrins. SDF1A/CXCR4 signaling axis inhibits beta-2 integrin LFA-1 mediated adhesion of monocytes to ICAM-1 through LYN kinase. Inhibits CXCR4-mediated infection by T-cell line-adapted HIV-1. Plays a protective role after myocardial infarction. Induces down-regulation and internalization of CXCR7 expressed in various cells. Has several critical functions during embryonic development; required for B-cell lymphopoiesis, myelopoiesis in bone marrow and heart ventricular septum formation.<ref>PMID:8752281</ref> <ref>PMID:11069075</ref> <ref>PMID:11859124</ref> <ref>PMID:16107333</ref> <ref>PMID:18802065</ref> <ref>PMID:19255243</ref> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j7/2j7z_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2j7z ConSurf]. | |||
<div style="clear:both"></div> | |||
== | ==See Also== | ||
*[[C-X-C motif chemokine 3D structures|C-X-C motif chemokine 3D structures]] | |||
*[[Stromal Derived Factor 1|Stromal Derived Factor 1]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Ahn | [[Category: Ahn K]] | ||
[[Category: Ban | [[Category: Ban C]] | ||
[[Category: Jung | [[Category: Jung ID]] | ||
[[Category: Kim | [[Category: Kim TG]] | ||
[[Category: Kwon | [[Category: Kwon TH]] | ||
[[Category: Park | [[Category: Park Y-M]] | ||
[[Category: Ryu | [[Category: Ryu DW]] | ||
[[Category: Ryu | [[Category: Ryu EK]] | ||
Latest revision as of 01:05, 21 November 2024
Crystal Structure of recombinant Human Stromal Cell-Derived Factor- 1alpha
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