3cfy: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,613 edits
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3cfy.jpg|left|200px]]


<!--
==Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus==
The line below this paragraph, containing "STRUCTURE_3cfy", creates the "Structure Box" on the page.
<StructureSection load='3cfy' size='340' side='right'caption='[[3cfy]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3cfy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CFY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cfy OCA], [https://pdbe.org/3cfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cfy RCSB], [https://www.ebi.ac.uk/pdbsum/3cfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cfy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cfy TOPSAN]</span></td></tr>
{{STRUCTURE_3cfy|  PDB=3cfy  |  SCENE= }}
</table>
 
== Function ==
'''Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus'''
[https://www.uniprot.org/uniprot/Q87PN2_VIBPA Q87PN2_VIBPA]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
3CFY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFY OCA].  
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/3cfy_consurf.spt"</scriptWhenChecked>
[[Category: Vibrio parahaemolyticus rimd 2210633]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Almo, S C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Burley, S K.]]
  </jmolCheckbox>
[[Category: Fong, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cfy ConSurf].
[[Category: Freeman, J.]]
<div style="clear:both"></div>
[[Category: Groshong, C.]]
__TOC__
[[Category: Iizuka, M.]]
</StructureSection>
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Large Structures]]
[[Category: Patskovsky, Y.]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Ramagopal, U A.]]
[[Category: Almo SC]]
[[Category: Sauder, J M.]]
[[Category: Burley SK]]
[[Category: Smith, D.]]
[[Category: Fong R]]
[[Category: Wasserman, S R.]]
[[Category: Freeman J]]
[[Category: Aaa-atpase]]
[[Category: Groshong C]]
[[Category: Atp-binding]]
[[Category: Iizuka M]]
[[Category: Dna-binding]]
[[Category: Patskovsky Y]]
[[Category: New york structural genomix research consortium]]
[[Category: Ramagopal UA]]
[[Category: Nucleotide-binding]]
[[Category: Sauder JM]]
[[Category: Nysgxrc]]
[[Category: Smith D]]
[[Category: Protein structure initiative]]
[[Category: Wasserman SR]]
[[Category: Psi-2]]
[[Category: Signal receiver domain]]
[[Category: Structural genomic]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Uncharacterized protein]]
[[Category: Unknown function]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 21:43:57 2008''
Retrieved from "https://proteopedia.org/3cfy"