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New page: left|200px<br /><applet load="1b73" size="450" color="white" frame="true" align="right" spinBox="true" caption="1b73, resolution 2.3Å" /> '''GLUTAMATE RACEMASE FR...
 
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[[Image:1b73.jpg|left|200px]]<br /><applet load="1b73" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1b73, resolution 2.3&Aring;" />
'''GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS'''<br />


==Overview==
==GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS==
Glutamate racemase (MurI) is responsible for the synthesis of D-glutamate, an essential building block of the peptidoglycan layer in bacterial cell, walls. The crystal structure of glutamate racemase from Aquifex, pyrophilus, determined at 2.3 A resolution, reveals that the enzyme forms, a dimer and each monomer consists of two alpha/beta fold domains, a unique, structure that has not been observed in other racemases or members of an, enolase superfamily. A substrate analog, D-glutamine, binds to the deep, pocket formed by conserved residues from two monomers. The structural and, mutational analyses allow us to propose a mechanism of metal, cofactor-independent glutamate racemase in which two cysteine residues are, involved in catalysis.
<StructureSection load='1b73' size='340' side='right'caption='[[1b73]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1b73]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_pyrophilus Aquifex pyrophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B73 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B73 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b73 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b73 OCA], [https://pdbe.org/1b73 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b73 RCSB], [https://www.ebi.ac.uk/pdbsum/1b73 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b73 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MURI_AQUPY MURI_AQUPY] Provides the (R)-glutamate required for cell wall biosynthesis. Converts L- or D-glutamate to D- or L-glutamate, respectively, but not other amino acids such as alanine, aspartate, and glutamine.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/1b73_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b73 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Glutamate racemase (MurI) is responsible for the synthesis of D-glutamate, an essential building block of the peptidoglycan layer in bacterial cell walls. The crystal structure of glutamate racemase from Aquifex pyrophilus, determined at 2.3 A resolution, reveals that the enzyme forms a dimer and each monomer consists of two alpha/beta fold domains, a unique structure that has not been observed in other racemases or members of an enolase superfamily. A substrate analog, D-glutamine, binds to the deep pocket formed by conserved residues from two monomers. The structural and mutational analyses allow us to propose a mechanism of metal cofactor-independent glutamate racemase in which two cysteine residues are involved in catalysis.


==About this Structure==
Structure and mechanism of glutamate racemase from Aquifex pyrophilus.,Hwang KY, Cho CS, Kim SS, Sung HC, Yu YG, Cho Y Nat Struct Biol. 1999 May;6(5):422-6. PMID:10331867<ref>PMID:10331867</ref>
1B73 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_pyrophilus Aquifex pyrophilus]. Active as [http://en.wikipedia.org/wiki/Glutamate_racemase Glutamate racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.3 5.1.1.3] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1B73 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Structure and mechanism of glutamate racemase from Aquifex pyrophilus., Hwang KY, Cho CS, Kim SS, Sung HC, Yu YG, Cho Y, Nat Struct Biol. 1999 May;6(5):422-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10331867 10331867]
</div>
<div class="pdbe-citations 1b73" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Glutamate racemase 3D structures|Glutamate racemase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Aquifex pyrophilus]]
[[Category: Aquifex pyrophilus]]
[[Category: Glutamate racemase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Cho CS]]
[[Category: Cho, C.S.]]
[[Category: Cho Y]]
[[Category: Cho, Y.]]
[[Category: Hwang KY]]
[[Category: Hwang, K.Y.]]
[[Category: Kim SS]]
[[Category: Kim, S.S.]]
[[Category: Yu YG]]
[[Category: Yu, Y.G.]]
[[Category: isomerase]]
[[Category: racemase]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:25:00 2007''

Latest revision as of 23:20, 27 December 2023

GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS

1b73, resolution 2.30Å

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