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New page: left|200px<br /><applet load="1b8l" size="450" color="white" frame="true" align="right" spinBox="true" caption="1b8l, resolution 1.70Å" /> '''Calcium-bound D51A/E...
 
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[[Image:1b8l.gif|left|200px]]<br /><applet load="1b8l" size="450" color="white" frame="true" align="right" spinBox="true"
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'''Calcium-bound D51A/E101D/F102W Triple Mutant of Beta Carp Parvalbumin'''<br />


==Overview==
==Calcium-bound D51A/E101D/F102W Triple Mutant of Beta Carp Parvalbumin==
BACKGROUND: The EF-hand family is a large set of Ca(2+)-binding proteins, that contain characteristic helix-loop-helix binding motifs that are, highly conserved in sequence. Members of this family include parvalbumin, and many prominent regulatory proteins such as calmodulin and troponin C., EF-hand proteins are involved in a variety of physiological processes, including cell-cycle regulation, second messenger production, muscle, contraction, microtubule organization and vision. RESULTS: We have, determined the structures of parvalbumin mutants designed to explore the, role of the last coordinating residue of the Ca(2+)-binding loop. An E101D, substitution has been made in the parvalbumin EF site. The substitution, decreases the Ca(2+)-binding affinity 100-fold and increases the, Mg(2+)-binding affinity 10-fold. Both the Ca(2+)- and Mg(2+)-bound, structures have been determined, and a structural basis has been proposed, for the metal-ion-binding properties. CONCLUSIONS: The E101D mutation does, not affect the Mg(2+) coordination geometry of the binding loop, but it, does pull the F helix 1.1 A towards the loop. The E101D-Ca(2+) structure, reveals that this mutant cannot obtain the sevenfold coordination, preferred by Ca(2+), presumably because of strain limits imposed by, tertiary structure. Analysis of these results relative to previously, reported structural information supports a model wherein the, characteristics of the last coordinating residue and the plasticity of the, Ca(2+)-binding loop delimit the allowable geometries for the coordinating, sphere.
<StructureSection load='1b8l' size='340' side='right'caption='[[1b8l]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1b8l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyprinus_carpio Cyprinus carpio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B8L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B8L FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b8l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b8l OCA], [https://pdbe.org/1b8l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b8l RCSB], [https://www.ebi.ac.uk/pdbsum/1b8l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b8l ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PRVB_CYPCA PRVB_CYPCA] In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b8/1b8l_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b8l ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
BACKGROUND: The EF-hand family is a large set of Ca(2+)-binding proteins that contain characteristic helix-loop-helix binding motifs that are highly conserved in sequence. Members of this family include parvalbumin and many prominent regulatory proteins such as calmodulin and troponin C. EF-hand proteins are involved in a variety of physiological processes including cell-cycle regulation, second messenger production, muscle contraction, microtubule organization and vision. RESULTS: We have determined the structures of parvalbumin mutants designed to explore the role of the last coordinating residue of the Ca(2+)-binding loop. An E101D substitution has been made in the parvalbumin EF site. The substitution decreases the Ca(2+)-binding affinity 100-fold and increases the Mg(2+)-binding affinity 10-fold. Both the Ca(2+)- and Mg(2+)-bound structures have been determined, and a structural basis has been proposed for the metal-ion-binding properties. CONCLUSIONS: The E101D mutation does not affect the Mg(2+) coordination geometry of the binding loop, but it does pull the F helix 1.1 A towards the loop. The E101D-Ca(2+) structure reveals that this mutant cannot obtain the sevenfold coordination preferred by Ca(2+), presumably because of strain limits imposed by tertiary structure. Analysis of these results relative to previously reported structural information supports a model wherein the characteristics of the last coordinating residue and the plasticity of the Ca(2+)-binding loop delimit the allowable geometries for the coordinating sphere.


==About this Structure==
Metal-ion affinity and specificity in EF-hand proteins: coordination geometry and domain plasticity in parvalbumin.,Cates MS, Berry MB, Ho EL, Li Q, Potter JD, Phillips GN Jr Structure. 1999 Oct 15;7(10):1269-78. PMID:10545326<ref>PMID:10545326</ref>
1B8L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Cyprinus_carpio Cyprinus carpio] with CO3 and CA as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1B8L OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Metal-ion affinity and specificity in EF-hand proteins: coordination geometry and domain plasticity in parvalbumin., Cates MS, Berry MB, Ho EL, Li Q, Potter JD, Phillips GN Jr, Structure. 1999 Oct 15;7(10):1269-78. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10545326 10545326]
</div>
<div class="pdbe-citations 1b8l" style="background-color:#fffaf0;"></div>
 
==See Also==
*[[Parvalbumin|Parvalbumin]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Cyprinus carpio]]
[[Category: Cyprinus carpio]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Berry, M.B.]]
[[Category: Berry MB]]
[[Category: Cates, M.S.]]
[[Category: Cates MS]]
[[Category: Ho, E.]]
[[Category: Ho E]]
[[Category: Jr., G.N.Phillips.]]
[[Category: Li Q]]
[[Category: Li, Q.]]
[[Category: Phillips Jr GN]]
[[Category: Potter, J.D.]]
[[Category: Potter JD]]
[[Category: CA]]
[[Category: CO3]]
[[Category: calcium binding protein]]
[[Category: calcium-binding]]
[[Category: ef-hand proteins]]
[[Category: parvalbumin]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:27:15 2007''

Latest revision as of 05:37, 9 August 2023

Calcium-bound D51A/E101D/F102W Triple Mutant of Beta Carp Parvalbumin

1b8l, resolution 1.70Å

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