3bd4: Difference between revisions

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[[Image:3bd4.jpg|left|200px]]


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==Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals==
The line below this paragraph, containing "STRUCTURE_3bd4", creates the "Structure Box" on the page.
<StructureSection load='3bd4' size='340' side='right'caption='[[3bd4]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3bd4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BD4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
{{STRUCTURE_3bd4| PDB=3bd4 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bd4 OCA], [https://pdbe.org/3bd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bd4 RCSB], [https://www.ebi.ac.uk/pdbsum/3bd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bd4 ProSAT]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bd4_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bd4 ConSurf].
<div style="clear:both"></div>


'''Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals'''
==See Also==
 
*[[Antibody 3D structures|Antibody 3D structures]]
 
*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
==About this Structure==
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
3BD4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BD4 OCA].
__TOC__
 
</StructureSection>
==Reference==
[[Category: Large Structures]]
Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals., Park SY, Lee WR, Lee SC, Kwon MH, Kim YS, Kim JS, Proteins. 2008 Jun;71(4):2091-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18338383 18338383]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Single protein]]
[[Category: Kim JS]]
[[Category: Kim, J S.]]
[[Category: Park SK]]
[[Category: Park, S K.]]
[[Category: Beta sandwich]]
[[Category: Immune system]]
[[Category: Metal]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun  4 10:01:29 2008''
Retrieved from "https://proteopedia.org/3bd4"