3bdk: Difference between revisions
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New page: '''Unreleased structure''' The entry 3bdk is ON HOLD until Paper Publication Authors: Gao, F., Zhang, Q.M., Peng, H., Liu, Y.W., Qi, J.X., Gao, G.F. Description: Crystal Structure of S... |
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==Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue== | |||
<StructureSection load='3bdk' size='340' side='right'caption='[[3bdk]], [[Resolution|resolution]] 2.50Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3bdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDK FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DNO:D-MANNOSE'>DNO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdk OCA], [https://pdbe.org/3bdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdk RCSB], [https://www.ebi.ac.uk/pdbsum/3bdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdk ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/UXUA_STRSY UXUA_STRSY] Catalyzes the dehydration of D-mannonate (By similarity). | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdk_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdk ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Streptococcus suis]] | |||
[[Category: Gao F]] | |||
[[Category: Gao GF]] | |||
[[Category: Liu YW]] | |||
[[Category: Peng H]] | |||
[[Category: Qi JX]] | |||
[[Category: Zhang QM]] | |||
Latest revision as of 14:44, 1 November 2023
Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue
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