3cpm: Difference between revisions

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New page: '''Unreleased structure''' The entry 3cpm is ON HOLD Authors: Rodgers, D.W., Houtz, R.L., Dirk, L.M.A., Schmidt, J.J., Cai, Y. Description: plant peptide deformylase PDF1B crystal stru...
 
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'''Unreleased structure'''


The entry 3cpm is ON HOLD
==plant peptide deformylase PDF1B crystal structure==
 
<StructureSection load='3cpm' size='340' side='right'caption='[[3cpm]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
Authors: Rodgers, D.W., Houtz, R.L., Dirk, L.M.A., Schmidt, J.J., Cai, Y.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3cpm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CPM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CPM FirstGlance]. <br>
Description: plant peptide deformylase PDF1B crystal structure
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cpm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cpm OCA], [https://pdbe.org/3cpm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cpm RCSB], [https://www.ebi.ac.uk/pdbsum/3cpm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cpm ProSAT]</span></td></tr>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 11 09:33:16 2008''
</table>
== Function ==
[https://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/3cpm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cpm ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Large Structures]]
[[Category: Cai Y]]
[[Category: Dirk LMA]]
[[Category: Houtz RL]]
[[Category: Rodgers DW]]
[[Category: Schmidt JJ]]
Retrieved from "https://proteopedia.org/3cpm"