3dec: Difference between revisions

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<!--
==Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron==
The line below this paragraph, containing "STRUCTURE_3dec", creates the "Structure Box" on the page.
<StructureSection load='3dec' size='340' side='right'caption='[[3dec]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEC FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3dec|  PDB=3dec |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dec FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dec OCA], [https://pdbe.org/3dec PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dec RCSB], [https://www.ebi.ac.uk/pdbsum/3dec PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dec ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dec TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dec_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dec ConSurf].
<div style="clear:both"></div>


'''Crystal structure of a glycosyl hydrolases family 2 protein from Bacteroides thetaiotaomicron'''
==See Also==
 
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3DEC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEC OCA].
[[Category: Large Structures]]
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
[[Category: Bonanno J]]
[[Category: Single protein]]
[[Category: Burley SK]]
[[Category: Bonanno, J.]]
[[Category: Kumaran D]]
[[Category: Burley, S K.]]
[[Category: Romero R]]
[[Category: Kumaran, D.]]
[[Category: Swaminathan S]]
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
[[Category: Romero, R.]]
[[Category: Swaminathan, S.]]
[[Category: Beta-galactosidase]]
[[Category: Glucosyl hydrolase family 2]]
[[Category: Immunoglobulin-like fold]]
[[Category: Jelly-roll fold]]
[[Category: New york structural genomix research consortium]]
[[Category: Nysgxrc]]
[[Category: Structural genomic]]
[[Category: Tim-barrel domain]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 18 12:13:32 2008''
Retrieved from "https://proteopedia.org/3dec"