1dur: Difference between revisions

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New page: left|200px<br /><applet load="1dur" size="450" color="white" frame="true" align="right" spinBox="true" caption="1dur, resolution 2.0Å" /> '''REPLACEMENT FOR 1FDX ...
 
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[[Image:1dur.gif|left|200px]]<br /><applet load="1dur" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1dur, resolution 2.0&Aring;" />
'''REPLACEMENT FOR 1FDX 2(4FE4S) FERREDOXIN FROM (NOW) PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS'''<br />


==About this Structure==
==Replacement for 1FDX 2(4FE4S) ferredoxin from (NOW) Peptostreptococcus asaccharolyticus==
1DUR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Peptoniphilus_asaccharolyticus Peptoniphilus asaccharolyticus] with SF4 as [http://en.wikipedia.org/wiki/ligand ligand]. This structure superseeds the now removed PDB entry 1FDX. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DUR OCA].  
<StructureSection load='1dur' size='340' side='right'caption='[[1dur]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1dur]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Peptoniphilus_asaccharolyticus Peptoniphilus asaccharolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DUR FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dur OCA], [https://pdbe.org/1dur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dur RCSB], [https://www.ebi.ac.uk/pdbsum/1dur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dur ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FER_PEPAS FER_PEPAS] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/1dur_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dur ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Peptoniphilus asaccharolyticus]]
[[Category: Peptoniphilus asaccharolyticus]]
[[Category: Single protein]]
[[Category: Adman ET]]
[[Category: Adman, E.T.]]
[[Category: Sieker LC]]
[[Category: Sieker, L.C.]]
[[Category: SF4]]
[[Category: two 4fe-4s clusters]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 13:36:04 2007''
Retrieved from "https://proteopedia.org/1dur"