1bvz: Difference between revisions

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{{Seed}}
[[Image:1bvz.png|left|200px]]


<!--
==ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47==
The line below this paragraph, containing "STRUCTURE_1bvz", creates the "Structure Box" on the page.
<StructureSection load='1bvz' size='340' side='right'caption='[[1bvz]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1bvz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoactinomyces_vulgaris Thermoactinomyces vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BVZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bvz OCA], [https://pdbe.org/1bvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bvz RCSB], [https://www.ebi.ac.uk/pdbsum/1bvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bvz ProSAT]</span></td></tr>
{{STRUCTURE_1bvz| PDB=1bvz |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/NEPU2_THEVU NEPU2_THEVU] Hydrolyzes pullulan efficiently but only a small amount of starch. Endohydrolysis of 1,4-alpha-glucosidic linkages in pullulan to form panose. Cleaves also (1-6)-alpha-glucosidic linkages to form maltotriose.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/1bvz_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bvz ConSurf].
<div style="clear:both"></div>


===ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47===
==See Also==
 
*[[Amylase 3D structures|Amylase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_10222200}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 10222200 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_10222200}}
 
==About this Structure==
1BVZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermoactinomyces_vulgaris Thermoactinomyces vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BVZ OCA].
 
==Reference==
Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution., Kamitori S, Kondo S, Okuyama K, Yokota T, Shimura Y, Tonozuka T, Sakano Y, J Mol Biol. 1999 Apr 16;287(5):907-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10222200 10222200]
[[Category: Neopullulanase]]
[[Category: Single protein]]
[[Category: Thermoactinomyces vulgaris]]
[[Category: Thermoactinomyces vulgaris]]
[[Category: Kamitori, S.]]
[[Category: Kamitori S]]
[[Category: Kondo, S.]]
[[Category: Kondo S]]
[[Category: Okuyama, K.]]
[[Category: Okuyama K]]
[[Category: Sakano, Y.]]
[[Category: Sakano Y]]
[[Category: Shimura, Y.]]
[[Category: Shimura Y]]
[[Category: Tonozuka, T.]]
[[Category: Tonozuka T]]
[[Category: Yokota, T.]]
[[Category: Yokota T]]
[[Category: Hydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 19:48:25 2008''

Latest revision as of 06:39, 7 February 2024

ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47

1bvz, resolution 2.60Å

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