1ddl: Difference between revisions

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{{Seed}}
[[Image:1ddl.png|left|200px]]


<!--
==DESMODIUM YELLOW MOTTLE TYMOVIRUS==
The line below this paragraph, containing "STRUCTURE_1ddl", creates the "Structure Box" on the page.
<StructureSection load='1ddl' size='340' side='right'caption='[[1ddl]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ddl]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Desmodium_yellow_mottle_virus Desmodium yellow mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DDL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DDL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ddl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ddl OCA], [https://pdbe.org/1ddl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ddl RCSB], [https://www.ebi.ac.uk/pdbsum/1ddl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ddl ProSAT]</span></td></tr>
{{STRUCTURE_1ddl|  PDB=1ddl  |  SCENE=  }}
</table>
 
== Function ==
===DESMODIUM YELLOW MOTTLE TYMOVIRUS===
[https://www.uniprot.org/uniprot/O89511_9VIRU O89511_9VIRU]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_10966774}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 10966774 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dd/1ddl_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_10966774}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ddl ConSurf].
1DDL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desmodium_yellow_mottle_virus Desmodium yellow mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DDL OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
Refined structure of desmodium yellow mottle tymovirus at 2.7 A resolution., Larson SB, Day J, Canady MA, Greenwood A, McPherson A, J Mol Biol. 2000 Aug 18;301(3):625-42. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10966774 10966774]
[[Category: Desmodium yellow mottle virus]]
[[Category: Desmodium yellow mottle virus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Canady, M A.]]
[[Category: Canady MA]]
[[Category: Day, J.]]
[[Category: Day J]]
[[Category: Greenwood, A.]]
[[Category: Greenwood A]]
[[Category: Larson, S B.]]
[[Category: Larson SB]]
[[Category: McPherson, A.]]
[[Category: McPherson A]]
[[Category: Capsid protein]]
[[Category: Coat protein]]
[[Category: Dymv]]
[[Category: Icosahedral virus]]
[[Category: Plant virus]]
[[Category: Rna]]
[[Category: Tymoviruse]]
[[Category: Water structure]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:52:09 2008''

Latest revision as of 06:52, 7 February 2024

DESMODIUM YELLOW MOTTLE TYMOVIRUS

1ddl, resolution 2.70Å

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