1dlm: Difference between revisions

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{{Seed}}
[[Image:1dlm.png|left|200px]]


<!--
==STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA==
The line below this paragraph, containing "STRUCTURE_1dlm", creates the "Structure Box" on the page.
<StructureSection load='1dlm' size='340' side='right'caption='[[1dlm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dlm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DLM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=LIO:[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL+CHOLINE'>LIO</scene></td></tr>
{{STRUCTURE_1dlm| PDB=1dlm |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dlm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dlm OCA], [https://pdbe.org/1dlm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dlm RCSB], [https://www.ebi.ac.uk/pdbsum/1dlm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dlm ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/CATA_ACIAD CATA_ACIAD]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/1dlm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dlm ConSurf].
<div style="clear:both"></div>


===STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA===
==See Also==
 
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_10801478}}, adds the Publication Abstract to the page
[[Category: Acinetobacter baylyi ADP1]]
(as it appears on PubMed at http://www.pubmed.gov), where 10801478 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Ohlendorf DH]]
{{ABSTRACT_PUBMED_10801478}}
[[Category: Vetting MW]]
 
==About this Structure==
1DLM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Acinetobacter_sp. Acinetobacter sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLM OCA].
 
==Reference==
The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker., Vetting MW, Ohlendorf DH, Structure. 2000 Apr 15;8(4):429-40. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10801478 10801478]
[[Category: Acinetobacter sp.]]
[[Category: Catechol 1,2-dioxygenase]]
[[Category: Single protein]]
[[Category: Ohlendorf, D H.]]
[[Category: Vetting, M W.]]
[[Category: Aromatic compound degradation]]
[[Category: Dioxygenase]]
[[Category: Metalloprotein]]
[[Category: Mixed alpha helix/ beta strand]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:15:25 2008''

Latest revision as of 06:55, 7 February 2024

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA

1dlm, resolution 2.00Å

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