1dnv: Difference between revisions

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{{Seed}}
[[Image:1dnv.png|left|200px]]


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==PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA==
The line below this paragraph, containing "STRUCTURE_1dnv", creates the "Structure Box" on the page.
<StructureSection load='1dnv' size='340' side='right'caption='[[1dnv]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dnv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Galleria_mellonella_densovirus Galleria mellonella densovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DNV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DNV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dnv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dnv OCA], [https://pdbe.org/1dnv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dnv RCSB], [https://www.ebi.ac.uk/pdbsum/1dnv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dnv ProSAT]</span></td></tr>
{{STRUCTURE_1dnv| PDB=1dnv |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/CAPSD_GMDNV CAPSD_GMDNV] Capsid protein self-assembles to form an icosahedral capsid with a T=1 symmetry, about 22 nm in diameter, and consisting of 60 copies of size variants of the capsid proteins, which differ in the N-terminushe capsid encapsulates the genomic ssDNA. Capsid proteins are responsible for the attachment to host cell receptors. This attachment induces virion internalization predominantly through clathrin-dependent endocytosis (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/1dnv_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dnv ConSurf].
<div style="clear:both"></div>


===PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA===
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_9817847}}, adds the Publication Abstract to the page
(as it appears on PubMed at http://www.pubmed.gov), where 9817847 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_9817847}}
 
==About this Structure==
1DNV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Galleria_mellonella_densovirus Galleria mellonella densovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DNV OCA].
 
==Reference==
The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution., Simpson AA, Chipman PR, Baker TS, Tijssen P, Rossmann MG, Structure. 1998 Nov 15;6(11):1355-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9817847 9817847]
[[Category: Galleria mellonella densovirus]]
[[Category: Galleria mellonella densovirus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Baker, T S.]]
[[Category: Baker TS]]
[[Category: Chipmann, P R.]]
[[Category: Chipmann PR]]
[[Category: Rossmann, M G.]]
[[Category: Rossmann MG]]
[[Category: Simpson, A A.]]
[[Category: Simpson AA]]
[[Category: Tijssen, P.]]
[[Category: Tijssen P]]
[[Category: Capsid protein]]
[[Category: Densovirus]]
[[Category: Icosahedral virus]]
[[Category: Parvovirus]]
[[Category: Viral capsid]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:20:58 2008''

Latest revision as of 05:58, 3 April 2024

PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA

1dnv, resolution 3.60Å

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