1eok: Difference between revisions

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{{Seed}}
[[Image:1eok.png|left|200px]]


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==CRYSTAL STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3==
The line below this paragraph, containing "STRUCTURE_1eok", creates the "Structure Box" on the page.
<StructureSection load='1eok' size='340' side='right'caption='[[1eok]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1eok]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Elizabethkingia_meningoseptica Elizabethkingia meningoseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EOK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1eok|  PDB=1eok  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eok OCA], [https://pdbe.org/1eok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eok RCSB], [https://www.ebi.ac.uk/pdbsum/1eok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eok ProSAT]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3===
== Function ==
 
[https://www.uniprot.org/uniprot/EBA3_ELIME EBA3_ELIME] Endohydrolysis of the di-N-acetylchitobiosyl unit in high-mannose glycopeptides and glycoproteins. Hydrolyzes bi- and triantennary glycans. The presence of a core-bound fucose greatly augments endo F3 activity on biantennary and, presumably, triantennary oligosaccharides.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_10891067}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 10891067 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eo/1eok_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_10891067}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1EOK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Elizabethkingia_meningoseptica Elizabethkingia meningoseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EOK OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eok ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structural basis for the substrate specificity of endo-beta-N-acetylglucosaminidase F(3)., Waddling CA, Plummer TH Jr, Tarentino AL, Van Roey P, Biochemistry. 2000 Jul 11;39(27):7878-85. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10891067 10891067]
</StructureSection>
[[Category: Elizabethkingia meningoseptica]]
[[Category: Elizabethkingia meningoseptica]]
[[Category: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Plummer Jr TH]]
[[Category: Jr., T H.Plummer.]]
[[Category: Tarentino AL]]
[[Category: Roey, P Van.]]
[[Category: Van Roey P]]
[[Category: Tarentino, A L.]]
[[Category: Waddling CA]]
[[Category: Waddling, C A.]]
[[Category: Alpha/beta-barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 01:19:39 2008''

Latest revision as of 07:05, 7 February 2024

CRYSTAL STRUCTURE OF ENDO-BETA-N-ACETYLGLUCOSAMINIDASE F3

1eok, resolution 1.80Å

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