1es3: Difference between revisions

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{{Seed}}
[[Image:1es3.png|left|200px]]


<!--
==C98A mutant of streptomyces K15 DD-transpeptidase==
The line below this paragraph, containing "STRUCTURE_1es3", creates the "Structure Box" on the page.
<StructureSection load='1es3' size='340' side='right'caption='[[1es3]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1es3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._K15 Streptomyces sp. K15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ES3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ES3 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_1es3| PDB=1es3 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1es3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1es3 OCA], [https://pdbe.org/1es3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1es3 RCSB], [https://www.ebi.ac.uk/pdbsum/1es3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1es3 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DACX_STRSK DACX_STRSK] Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/es/1es3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1es3 ConSurf].
<div style="clear:both"></div>


===C98A mutant of streptomyces K15 DD-transpeptidase===
==See Also==
 
*[[Carboxypeptidase 3D structures|Carboxypeptidase 3D structures]]
 
*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
<!--
__TOC__
The line below this paragraph, {{ABSTRACT_PUBMED_12627955}}, adds the Publication Abstract to the page
</StructureSection>
(as it appears on PubMed at http://www.pubmed.gov), where 12627955 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Streptomyces sp. K15]]
{{ABSTRACT_PUBMED_12627955}}
[[Category: Charlier P]]
 
[[Category: Fonze E]]
==About this Structure==
1ES3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ES3 OCA].
 
==Reference==
Catalytic mechanism of the Streptomyces K15 DD-transpeptidase/penicillin-binding protein probed by site-directed mutagenesis and structural analysis., Rhazi N, Charlier P, Dehareng D, Engher D, Vermeire M, Frere JM, Nguyen-Disteche M, Fonze E, Biochemistry. 2003 Mar 18;42(10):2895-906. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12627955 12627955]
[[Category: Serine-type D-Ala-D-Ala carboxypeptidase]]
[[Category: Single protein]]
[[Category: Streptomyces sp.]]
[[Category: Charlier, P.]]
[[Category: Fonze, E.]]
[[Category: Beta-lactamase]]
[[Category: Dd-transpeptidase]]
[[Category: Hydrolase carboxypeptidase]]
[[Category: Penicillin-binding]]
[[Category: Serine peptidase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 01:47:22 2008''

Latest revision as of 07:06, 7 February 2024

C98A mutant of streptomyces K15 DD-transpeptidase

1es3, resolution 2.20Å

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