1f98: Difference between revisions

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{{Seed}}
[[Image:1f98.png|left|200px]]


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==CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT T50V==
The line below this paragraph, containing "STRUCTURE_1f98", creates the "Structure Box" on the page.
<StructureSection load='1f98' size='340' side='right'caption='[[1f98]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1f98]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F98 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F98 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HC4:4-HYDROXYCINNAMIC+ACID'>HC4</scene></td></tr>
{{STRUCTURE_1f98|  PDB=1f98  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f98 OCA], [https://pdbe.org/1f98 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f98 RCSB], [https://www.ebi.ac.uk/pdbsum/1f98 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f98 ProSAT]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT T50V===
== Function ==
 
[https://www.uniprot.org/uniprot/PYP_HALHA PYP_HALHA] Photoactive blue light protein. Probably functions as a photoreceptor for a negative phototaxis response.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_11063584}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 11063584 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f9/1f98_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_11063584}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1F98 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halorhodospira_halophila Halorhodospira halophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F98 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f98 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein., Brudler R, Meyer TE, Genick UK, Devanathan S, Woo TT, Millar DP, Gerwert K, Cusanovich MA, Tollin G, Getzoff ED, Biochemistry. 2000 Nov 7;39(44):13478-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11063584 11063584]
</StructureSection>
[[Category: Halorhodospira halophila]]
[[Category: Halorhodospira halophila]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Brudler, R.]]
[[Category: Brudler R]]
[[Category: Genick, U K.]]
[[Category: Genick UK]]
[[Category: Getzoff, E D.]]
[[Category: Getzoff ED]]
[[Category: Meyer, T E.]]
[[Category: Meyer TE]]
[[Category: Tollin, G.]]
[[Category: Tollin G]]
[[Category: Light-sensor for negative phototaxis]]
[[Category: Photoreceptor]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 02:54:07 2008''
Retrieved from "https://proteopedia.org/1f98"