1flz: Difference between revisions

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{{Seed}}
[[Image:1flz.png|left|200px]]


<!--
==URACIL DNA GLYCOSYLASE WITH UAAP==
The line below this paragraph, containing "STRUCTURE_1flz", creates the "Structure Box" on the page.
<StructureSection load='1flz' size='340' side='right'caption='[[1flz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1flz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_B Escherichia coli B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FLZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FLZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=URA:URACIL'>URA</scene></td></tr>
{{STRUCTURE_1flz| PDB=1flz |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1flz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1flz OCA], [https://pdbe.org/1flz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1flz RCSB], [https://www.ebi.ac.uk/pdbsum/1flz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1flz ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/UNG_ECOLI UNG_ECOLI] Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.[HAMAP-Rule:MF_00148]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fl/1flz_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1flz ConSurf].
<div style="clear:both"></div>


===URACIL DNA GLYCOSYLASE WITH UAAP===
==See Also==
 
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_11027138}}, adds the Publication Abstract to the page
[[Category: Escherichia coli B]]
(as it appears on PubMed at http://www.pubmed.gov), where 11027138 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Gilliland GL]]
{{ABSTRACT_PUBMED_11027138}}
[[Category: Gordley RG]]
 
[[Category: Jagadeesh GJ]]
==About this Structure==
[[Category: Jiang YL]]
1FLZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FLZ OCA].
[[Category: Ladner JE]]
 
[[Category: Stivers JT]]
==Reference==
[[Category: Tordova M]]
Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase., Werner RM, Jiang YL, Gordley RG, Jagadeesh GJ, Ladner JE, Xiao G, Tordova M, Gilliland GL, Stivers JT, Biochemistry. 2000 Oct 17;39(41):12585-94. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11027138 11027138]
[[Category: Werner RM]]
[[Category: Escherichia coli]]
[[Category: Xiao G]]
[[Category: Single protein]]
[[Category: Uridine nucleosidase]]
[[Category: Gilliland, G L.]]
[[Category: Gordley, R G.]]
[[Category: Jagadeesh, G J.]]
[[Category: Jiang, Y L.]]
[[Category: Ladner, J E.]]
[[Category: Stivers, J T.]]
[[Category: Tordova, M.]]
[[Category: Werner, R M.]]
[[Category: Xiao, G.]]
[[Category: Glycosylase]]
[[Category: Hydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 03:27:55 2008''

Latest revision as of 07:16, 7 February 2024

URACIL DNA GLYCOSYLASE WITH UAAP

1flz, resolution 2.30Å

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