5ukd: Difference between revisions

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New page: left|200px<br /><applet load="5ukd" size="450" color="white" frame="true" align="right" spinBox="true" caption="5ukd, resolution 1.9Å" /> '''PH INFLUENCES FLUORID...
 
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[[Image:5ukd.gif|left|200px]]<br /><applet load="5ukd" size="450" color="white" frame="true" align="right" spinBox="true"
caption="5ukd, resolution 1.9&Aring;" />
'''PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG'''<br />


==About this Structure==
==PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TRANSFER TRANSITION STATE ANALOG==
5UKD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum] with MG, ADP, C5P and AF3 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Cytidylate_kinase Cytidylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.14 2.7.4.14] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=5UKD OCA].  
<StructureSection load='5ukd' size='340' side='right'caption='[[5ukd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
[[Category: Cytidylate kinase]]
== Structural highlights ==
<table><tr><td colspan='2'>[[5ukd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dictyostelium_discoideum Dictyostelium discoideum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UKD FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=C5P:CYTIDINE-5-MONOPHOSPHATE'>C5P</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ukd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ukd OCA], [https://pdbe.org/5ukd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ukd RCSB], [https://www.ebi.ac.uk/pdbsum/5ukd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ukd ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/KCY_DICDI KCY_DICDI] This UMP-CMP kinase uses preferentially ATP as phosphate donor and is specific for UMP and CMP.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uk/5ukd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5ukd ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[UMP/CMP kinase|UMP/CMP kinase]]
__TOC__
</StructureSection>
[[Category: Dictyostelium discoideum]]
[[Category: Dictyostelium discoideum]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Reinstein, J.]]
[[Category: Reinstein J]]
[[Category: Schlichting, I.]]
[[Category: Schlichting I]]
[[Category: ADP]]
[[Category: AF3]]
[[Category: C5P]]
[[Category: MG]]
[[Category: nmp kinase]]
[[Category: nucleoside monophosphate kinase]]
[[Category: phosphoryl transfer]]
[[Category: transferase]]
[[Category: transition state analog complex]]
 
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