1j8b: Difference between revisions

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{{Seed}}
[[Image:1j8b.png|left|200px]]


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==Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function==
The line below this paragraph, containing "STRUCTURE_1j8b", creates the "Structure Box" on the page.
<StructureSection load='1j8b' size='340' side='right'caption='[[1j8b]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1j8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J8B FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_1j8b|  PDB=1j8b  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j8b OCA], [https://pdbe.org/1j8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j8b RCSB], [https://www.ebi.ac.uk/pdbsum/1j8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j8b ProSAT]</span></td></tr>
 
</table>
===Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function===
== Function ==
 
[https://www.uniprot.org/uniprot/Y442_HAEIN Y442_HAEIN] Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (By similarity).[HAMAP-Rule:MF_00274]
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12571243}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12571243 is the PubMed ID number.
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j8/1j8b_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12571243}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1J8B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J8B OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j8b ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
A catalytic mechanism for D-Tyr-tRNATyr deacylase based on the crystal structure of Hemophilus influenzae HI0670., Lim K, Tempczyk A, Bonander N, Toedt J, Howard A, Eisenstein E, Herzberg O, J Biol Chem. 2003 Apr 11;278(15):13496-502. Epub 2003 Feb 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12571243 12571243]
</StructureSection>
[[Category: Haemophilus influenzae]]
[[Category: Haemophilus influenzae Rd KW20]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Eisenstein, E.]]
[[Category: Eisenstein E]]
[[Category: Herzberg, O.]]
[[Category: Herzberg O]]
[[Category: Howard, A.]]
[[Category: Howard A]]
[[Category: Lim, K.]]
[[Category: Lim K]]
[[Category: Parsons, J F.]]
[[Category: Parsons JF]]
[[Category: S2F, Structure 2.Function Project.]]
[[Category: Tempcyzk A]]
[[Category: Tempcyzk, A.]]
[[Category: Toedt J]]
[[Category: Toedt, J.]]
[[Category: Hi0442]]
[[Category: Hypothetical protein]]
[[Category: S2f]]
[[Category: Structural genomic]]
[[Category: Structure 2 function project]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 14:37:39 2008''

Latest revision as of 06:48, 30 October 2024

Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function

1j8b, resolution 1.75Å

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