1jif: Difference between revisions

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{{Seed}}
[[Image:1jif.png|left|200px]]


<!--
==Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin==
The line below this paragraph, containing "STRUCTURE_1jif", creates the "Structure Box" on the page.
<StructureSection load='1jif' size='340' side='right'caption='[[1jif]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1jif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_verticillus Streptomyces verticillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JIF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLM:BLEOMYCIN+A2'>BLM</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
{{STRUCTURE_1jif|  PDB=1jif  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jif OCA], [https://pdbe.org/1jif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jif RCSB], [https://www.ebi.ac.uk/pdbsum/1jif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jif ProSAT]</span></td></tr>
 
</table>
===Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin===
== Function ==
 
[https://www.uniprot.org/uniprot/Q53793_9ACTN Q53793_9ACTN]
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_11706014}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 11706014 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/1jif_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_11706014}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1JIF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_verticillus Streptomyces verticillus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JIF OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jif ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus., Sugiyama M, Kumagai T, Hayashida M, Maruyama M, Matoba Y, J Biol Chem. 2002 Jan 18;277(3):2311-20. Epub 2001 Nov 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11706014 11706014]
</StructureSection>
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Streptomyces verticillus]]
[[Category: Streptomyces verticillus]]
[[Category: Hayashida, M.]]
[[Category: Hayashida M]]
[[Category: Kumagai, T.]]
[[Category: Kumagai T]]
[[Category: Maruyama, M.]]
[[Category: Maruyama M]]
[[Category: Matoba, Y.]]
[[Category: Matoba Y]]
[[Category: Sugiyama, M.]]
[[Category: Sugiyama M]]
[[Category: Protein-ligand complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 20:17:43 2008''

Latest revision as of 13:24, 13 March 2024

Crystal structure of bleomycin-binding protein from bleomycin-producing Streptomyces verticillus complexed with copper(II)-bleomycin

1jif, resolution 1.60Å

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