1jm1: Difference between revisions

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{{Seed}}
[[Image:1jm1.png|left|200px]]


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==Crystal structure of the soluble domain of the Rieske protein II (soxF) from Sulfolobus acidocaldarius==
The line below this paragraph, containing "STRUCTURE_1jm1", creates the "Structure Box" on the page.
<StructureSection load='1jm1' size='340' side='right'caption='[[1jm1]], [[Resolution|resolution]] 1.11&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1jm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JM1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.11&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
{{STRUCTURE_1jm1|  PDB=1jm1  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jm1 OCA], [https://pdbe.org/1jm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jm1 RCSB], [https://www.ebi.ac.uk/pdbsum/1jm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jm1 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q53766_9CREN Q53766_9CREN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jm/1jm1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jm1 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The first crystal structure of an archaeal Rieske iron-sulfur protein, the soluble domain of Rieske iron-sulfur protein II (soxF) from the hyperthermo-acidophile Sulfolobus acidocaldarius, has been solved by multiple wavelength anomalous dispersion (MAD) and has been refined to 1.1 A resolution. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of S. acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome c oxidase. The [2Fe-2S] cluster of soxF is most likely the primary electron acceptor during the oxidation of caldariella quinone by the cytochrome a(587)/Rieske subcomplex. The geometry of the [2Fe-2S] cluster and the structure of the cluster-binding site are almost identical in soxF and the Rieske proteins from eucaryal cytochrome bc(1) and b(6)f complexes, suggesting a strict conservation of the catalytic mechanism. The main domain of soxF and part of the cluster-binding domain, though structurally related, show a significantly divergent structure with respect to topology, non-covalent interactions and surface charges. The divergent structure of soxF reflects a different topology of the soxM complex compared to eucaryal bc complexes and the adaptation of the protein to the extreme ambient conditions on the outer membrane surface of a hyperthermo-acidophilic organism.


===Crystal structure of the soluble domain of the Rieske protein II (soxF) from Sulfolobus acidocaldarius===
The structure of the soluble domain of an archaeal Rieske iron-sulfur protein at 1.1 A resolution.,Bonisch H, Schmidt CL, Schafer G, Ladenstein R J Mol Biol. 2002 Jun 7;319(3):791-805. PMID:12054871<ref>PMID:12054871</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_12054871}}, adds the Publication Abstract to the page
<div class="pdbe-citations 1jm1" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 12054871 is the PubMed ID number.
== References ==
-->
<references/>
{{ABSTRACT_PUBMED_12054871}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
1JM1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JM1 OCA].
 
==Reference==
The structure of the soluble domain of an archaeal Rieske iron-sulfur protein at 1.1 A resolution., Bonisch H, Schmidt CL, Schafer G, Ladenstein R, J Mol Biol. 2002 Jun 7;319(3):791-805. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12054871 12054871]
[[Category: Single protein]]
[[Category: Sulfolobus acidocaldarius]]
[[Category: Sulfolobus acidocaldarius]]
[[Category: Boenisch, H.]]
[[Category: Boenisch H]]
[[Category: Ladenstein, R.]]
[[Category: Ladenstein R]]
[[Category: Schaefer, G.]]
[[Category: Schaefer G]]
[[Category: Schmidt, C L.]]
[[Category: Schmidt CL]]
[[Category: Electron transport]]
[[Category: Respiratory chain]]
[[Category: Rieske iron-sulfur protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 20:27:24 2008''
Retrieved from "https://proteopedia.org/1jm1"