1l3j: Difference between revisions

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{{Seed}}
[[Image:1l3j.png|left|200px]]


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==Crystal Structure of Oxalate Decarboxylase Formate Complex==
The line below this paragraph, containing "STRUCTURE_1l3j", creates the "Structure Box" on the page.
<StructureSection load='1l3j' size='340' side='right'caption='[[1l3j]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1l3j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3J FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
{{STRUCTURE_1l3j|  PDB=1l3j  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3j OCA], [https://pdbe.org/1l3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3j RCSB], [https://www.ebi.ac.uk/pdbsum/1l3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3j ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of Oxalate Decarboxylase Formate Complex===
== Function ==
 
[https://www.uniprot.org/uniprot/OXDC_BACSU OXDC_BACSU] Converts oxalate to formate and CO(2) in an O(2)-dependent reaction. Can also catalyze minor side reactions: oxalate oxidation to produce H(2)O(2), and oxalate-dependent, H(2)O(2)-independent dye oxidations.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3j_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12056897}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1L3J is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3J OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3j ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution., Anand R, Dorrestein PC, Kinsland C, Begley TP, Ealick SE, Biochemistry. 2002 Jun 18;41(24):7659-69. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12056897 12056897]
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Anand, R.]]
[[Category: Anand R]]
[[Category: Begley, T P.]]
[[Category: Begley TP]]
[[Category: Dorrestein, P C.]]
[[Category: Dorrestein PC]]
[[Category: Ealick, S E.]]
[[Category: Ealick SE]]
[[Category: Kinsland, C.]]
[[Category: Kinsland C]]
[[Category: Cupin]]
[[Category: Decarboxylase]]
[[Category: Formate]]
[[Category: Manganese]]
[[Category: Oxalate]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 11:37:25 2008''
Retrieved from "https://proteopedia.org/1l3j"