1lc6: Difference between revisions

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{{Seed}}
[[Image:1lc6.png|left|200px]]


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==Solution Structure of the U6 Intramolecular Stem-loop RNA==
The line below this paragraph, containing "STRUCTURE_1lc6", creates the "Structure Box" on the page.
<StructureSection load='1lc6' size='340' side='right'caption='[[1lc6]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1lc6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LC6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lc6 OCA], [https://pdbe.org/1lc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lc6 RCSB], [https://www.ebi.ac.uk/pdbsum/1lc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lc6 ProSAT]</span></td></tr>
{{STRUCTURE_1lc6|  PDB=1lc6  |  SCENE=  }}
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
U6 RNA is a key component of the catalytic core of the spliceosome. A metal ion essential for the first catalytic step of pre-mRNA splicing binds to the U80 Sp phosphate oxygen within the yeast U6 intramolecular stem-loop (ISL). Here we present the first structural data for U6 RNA, revealing the three-dimensional structure of the highly conserved U6 ISL. The ISL binds metal ion at the U80 site with the same stereo specificity as the intact spliceosome. The metal-binding site is adjacent to a readily protonated C.A wobble pair. Protonation of the C.A pair and metal binding are mutually antagonistic. These results support a ribozyme model for U6 RNA function and suggest a possible mechanism for the regulation of RNA splicing.


===Solution Structure of the U6 Intramolecular Stem-loop RNA===
Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure.,Huppler A, Nikstad LJ, Allmann AM, Brow DA, Butcher SE Nat Struct Biol. 2002 Jun;9(6):431-5. PMID:11992125<ref>PMID:11992125</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1lc6" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 11992125 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_11992125}}
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</StructureSection>
==About this Structure==
[[Category: Large Structures]]
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LC6 OCA].
[[Category: Allmann AM]]
 
[[Category: Brow DA]]
==Reference==
[[Category: Butcher SE]]
Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure., Huppler A, Nikstad LJ, Allmann AM, Brow DA, Butcher SE, Nat Struct Biol. 2002 Jun;9(6):431-5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11992125 11992125]
[[Category: Huppler A]]
[[Category: Allmann, A M.]]
[[Category: Nikstad LJ]]
[[Category: Brow, D A.]]
[[Category: Butcher, S E.]]
[[Category: Huppler, A.]]
[[Category: Nikstad, L J.]]
[[Category: Pentaloop]]
[[Category: Rna]]
[[Category: Stem-loop]]
 
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Latest revision as of 18:48, 29 November 2023

Solution Structure of the U6 Intramolecular Stem-loop RNA

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