1mc9: Difference between revisions

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{{Seed}}
[[Image:1mc9.png|left|200px]]


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==STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH XYLOPENTAOSE==
The line below this paragraph, containing "STRUCTURE_1mc9", creates the "Structure Box" on the page.
<StructureSection load='1mc9' size='340' side='right'caption='[[1mc9]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1mc9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1knn 1knn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MC9 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
{{STRUCTURE_1mc9|  PDB=1mc9  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mc9 OCA], [https://pdbe.org/1mc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mc9 RCSB], [https://www.ebi.ac.uk/pdbsum/1mc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mc9 ProSAT]</span></td></tr>
 
</table>
===STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH XYLOPENTAOSE===
== Function ==
 
[https://www.uniprot.org/uniprot/XYNA_STRLI XYNA_STRLI] Contributes to hydrolyze hemicellulose, the major component of plant cell-walls. XLNA and XLNB seem to act sequentially on the substrate to yield xylobiose and xylose as carbon sources.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_11914070}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 11914070 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mc/1mc9_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_11914070}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1MC9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1knn 1knn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MC9 OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mc9 ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding., Notenboom V, Boraston AB, Williams SJ, Kilburn DG, Rose DR, Biochemistry. 2002 Apr 2;41(13):4246-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11914070 11914070]
</StructureSection>
[[Category: Endo-1,4-beta-xylanase]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Streptomyces lividans]]
[[Category: Streptomyces lividans]]
[[Category: Boraston, A B.]]
[[Category: Boraston AB]]
[[Category: Kilburn, D G.]]
[[Category: Kilburn DG]]
[[Category: Notenboom, V.]]
[[Category: Notenboom V]]
[[Category: Rose, D R.]]
[[Category: Rose DR]]
[[Category: Williams, S J.]]
[[Category: Williams SJ]]
[[Category: Lectin-like beta-trefoil fold]]
[[Category: Xylanase a xylan binding domain cbm13]]
[[Category: Xylopentaose complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 23:40:15 2008''

Latest revision as of 08:34, 10 April 2024

STREPROMYCES LIVIDANS XYLAN BINDING DOMAIN CBM13 IN COMPLEX WITH XYLOPENTAOSE

1mc9, resolution 1.70Å

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