1mdf: Difference between revisions

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{{Seed}}
[[Image:1mdf.png|left|200px]]


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==CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE==
The line below this paragraph, containing "STRUCTURE_1mdf", creates the "Structure Box" on the page.
<StructureSection load='1mdf' size='340' side='right'caption='[[1mdf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1mdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MDF FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1mdf|  PDB=1mdf  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mdf OCA], [https://pdbe.org/1mdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mdf RCSB], [https://www.ebi.ac.uk/pdbsum/1mdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mdf ProSAT]</span></td></tr>
 
</table>
===CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE===
== Function ==
 
[https://www.uniprot.org/uniprot/DHBE_BACSU DHBE_BACSU] Activation of the carboxylate group of 2,3-dihydroxy-benzoate (DHB), via ATP-dependent PPi exchange reactions, to the acyladenylate.
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12221282}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 12221282 is the PubMed ID number.
  <jmolCheckbox>
-->
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/1mdf_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12221282}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
1MDF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MDF OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mdf ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases., May JJ, Kessler N, Marahiel MA, Stubbs MT, Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12120-5. Epub 2002 Sep 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12221282 12221282]
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Kessler, N.]]
[[Category: Kessler N]]
[[Category: Marahiel, M A.]]
[[Category: Marahiel MA]]
[[Category: May, J J.]]
[[Category: May JJ]]
[[Category: Stubbs, M T.]]
[[Category: Stubbs MT]]
[[Category: Adenylation domain]]
[[Category: Antibiotic biosynthesis]]
[[Category: Ligase]]
[[Category: Peptide synthetase]]
[[Category: Siderophore formation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 23:43:51 2008''

Latest revision as of 07:43, 14 February 2024

CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE

1mdf, resolution 2.50Å

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