3di4: Difference between revisions

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[[Image:3di4.jpg|left|200px]]


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==Crystal structure of a duf1989 family protein (spo0365) from silicibacter pomeroyi dss-3 at 1.60 A resolution==
The line below this paragraph, containing "STRUCTURE_3di4", creates the "Structure Box" on the page.
<StructureSection load='3di4' size='340' side='right'caption='[[3di4]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3di4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi_DSS-3 Ruegeria pomeroyi DSS-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DI4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DI4 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_3di4|  PDB=3di4  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3di4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3di4 OCA], [https://pdbe.org/3di4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3di4 RCSB], [https://www.ebi.ac.uk/pdbsum/3di4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3di4 ProSAT], [https://www.topsan.org/Proteins/JCSG/3di4 TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of protein of unknown function (DUF1989) (YP_165628.1) from SILICIBACTER POMEROYI DSS-3 at 1.60 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5LXE3_RUEPO Q5LXE3_RUEPO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3DI4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DI4 OCA].  
Check<jmol>
[[Category: Bacteria]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/3di4_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Jcsg]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joint center for structural genomic]]
  </jmolCheckbox>
[[Category: Protein structure initiative]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3di4 ConSurf].
[[Category: Psi-2]]
<div style="clear:both"></div>
[[Category: Structural genomic]]
__TOC__
[[Category: Unknown function]]
</StructureSection>
[[Category: Yp_165628 1]]
[[Category: Large Structures]]
 
[[Category: Ruegeria pomeroyi DSS-3]]
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Retrieved from "https://proteopedia.org/3di4"