3brz: Difference between revisions

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{{Seed}}
[[Image:3brz.png|left|200px]]


<!--
==Crystal structure of the Pseudomonas putida toluene transporter TodX==
The line below this paragraph, containing "STRUCTURE_3brz", creates the "Structure Box" on the page.
<StructureSection load='3brz' size='340' side='right'caption='[[3brz]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3brz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_F1 Pseudomonas putida F1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BRZ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>
{{STRUCTURE_3brz|  PDB=3brz  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3brz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3brz OCA], [https://pdbe.org/3brz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3brz RCSB], [https://www.ebi.ac.uk/pdbsum/3brz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3brz ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the Pseudomonas putida toluene transporter TodX===
== Function ==
 
[https://www.uniprot.org/uniprot/A5W4F4_PSEP1 A5W4F4_PSEP1]  
 
== Evolutionary Conservation ==
<!--
[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18559855}}, adds the Publication Abstract to the page
Check<jmol>
(as it appears on PubMed at http://www.pubmed.gov), where 18559855 is the PubMed ID number.
  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/3brz_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18559855}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
3BRZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRZ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3brz ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation., Hearn EM, Patel DR, van den Berg B, Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8601-6. Epub 2008 Jun 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18559855 18559855]
</StructureSection>
[[Category: Pseudomonas putida]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Pseudomonas putida F1]]
[[Category: Berg, B van den.]]
[[Category: Hearn EM]]
[[Category: Hearn, E M.]]
[[Category: Patel DR]]
[[Category: Patel, D R.]]
[[Category: Van den Berg B]]
[[Category: Beta barrel]]
[[Category: Outer membrane protein]]
[[Category: Transport protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 08:47:26 2008''

Latest revision as of 09:30, 21 February 2024

Crystal structure of the Pseudomonas putida toluene transporter TodX

3brz, resolution 3.20Å

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