3d4t: Difference between revisions

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{{Seed}}
[[Image:3d4t.jpg|left|200px]]


<!--
==Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (oxidized form)==
The line below this paragraph, containing "STRUCTURE_3d4t", creates the "Structure Box" on the page.
<StructureSection load='3d4t' size='340' side='right'caption='[[3d4t]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d4t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D4T FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene></td></tr>
{{STRUCTURE_3d4t|  PDB=3d4t  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4t OCA], [https://pdbe.org/3d4t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d4t RCSB], [https://www.ebi.ac.uk/pdbsum/3d4t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4t ProSAT]</span></td></tr>
 
</table>
===Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (oxidized form)===
== Function ==
 
[https://www.uniprot.org/uniprot/Q8KM22_PARDE Q8KM22_PARDE]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3D4T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4T OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d4t_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d4t ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
[[Category: Single protein]]
[[Category: Carius Y]]
[[Category: Carius, Y.]]
[[Category: Friedrich CG]]
[[Category: Friedrich, C G.]]
[[Category: Scheidig AJ]]
[[Category: Scheidig, A J.]]
[[Category: Oxidoreductase]]
[[Category: Sulfur oxidation]]
[[Category: Thioredoxin]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 10:49:16 2008''

Latest revision as of 05:55, 6 August 2025

Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (oxidized form)

3d4t, resolution 2.05Å

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