2r7m: Difference between revisions

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{{Seed}}
[[Image:2r7m.png|left|200px]]


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==Crystal structure of FAICAR synthetase (PurP) from M. jannaschii complexed with AMP==
The line below this paragraph, containing "STRUCTURE_2r7m", creates the "Structure Box" on the page.
<StructureSection load='2r7m' size='340' side='right'caption='[[2r7m]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r7m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R7M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R7M FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_2r7m|  PDB=2r7m  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r7m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r7m OCA], [https://pdbe.org/2r7m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r7m RCSB], [https://www.ebi.ac.uk/pdbsum/2r7m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r7m ProSAT]</span></td></tr>
 
</table>
===Crystal structure of FAICAR synthetase (PurP) from M. jannaschii complexed with AMP===
== Function ==
 
[https://www.uniprot.org/uniprot/PURP_METJA PURP_METJA] Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates.<ref>PMID:15623504</ref>
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_18069798}}, adds the Publication Abstract to the page
Check<jmol>
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  <jmolCheckbox>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r7/2r7m_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_18069798}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
2R7M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R7M OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r7m ConSurf].
 
<div style="clear:both"></div>
==Reference==
== References ==
Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii., Zhang Y, White RH, Ealick SE, Biochemistry. 2008 Jan 8;47(1):205-17. Epub 2007 Dec 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18069798 18069798]
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Methanocaldococcus jannaschii]]
[[Category: Methanocaldococcus jannaschii]]
[[Category: Single protein]]
[[Category: Ealick SE]]
[[Category: Ealick, S E.]]
[[Category: White RH]]
[[Category: White, R H.]]
[[Category: Zhang Y]]
[[Category: Zhang, Y.]]
[[Category: Atp-binding]]
[[Category: Atp-grasp superfamily]]
[[Category: Ligase]]
[[Category: Magnesium]]
[[Category: Manganese]]
[[Category: Metal-binding]]
[[Category: Nucleotide-binding]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 10:09:11 2008''

Latest revision as of 09:20, 21 February 2024

Crystal structure of FAICAR synthetase (PurP) from M. jannaschii complexed with AMP

2r7m, resolution 2.30Å

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